Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E15
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05280.1 68414.m00534 fringe-related protein Similar to hypot...    28   4.4  
At3g62730.1 68416.m07047 expressed protein DESSICATION-RELATED P...    28   5.8  

>At1g05280.1 68414.m00534 fringe-related protein Similar to
           hypothetical protein PID|e327464 (gb|Z97338) various
           hypothetical proteins from Arabidopsis thaliana strong
           similarity to unknown protein (pir||T13026) similarity
           to predicted proteins + similar to hypothetical protein
           GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
           Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 461

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
 Frame = -1

Query: 144 DRNAVAISKCXLPTRTIFNS-----XWYFF 70
           DRNA+ I++C L T  +FN+      WY F
Sbjct: 142 DRNAIRIARCVLETVRLFNTSSEEVRWYVF 171


>At3g62730.1 68416.m07047 expressed protein DESSICATION-RELATED
           PROTEIN PCC13-62 PRECURSOR - Craterostigma plantagineum,
           PIR:E45509
          Length = 317

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 352 KFQIYEYYFICTLTNQL*NLRFSLSMCTSKTYNLWRPLLL 471
           K + Y    +  LTN++ NLR  L MC  K   L  PL L
Sbjct: 205 KVEEYGGVTVAELTNEISNLRNELGMCGIKDEGLCVPLWL 244


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,998,912
Number of Sequences: 28952
Number of extensions: 223076
Number of successful extensions: 386
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)