Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E14
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14756| Best HMM Match : PIG-U (HMM E-Value=4.3)                     32   0.37 
SB_39464| Best HMM Match : 7tm_1 (HMM E-Value=4e-39)                   29   2.6  

>SB_14756| Best HMM Match : PIG-U (HMM E-Value=4.3)
          Length = 194

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 453 IGIITVSENYFRKFHTTLFLSI*KQFIIQHLYFFVTNILINFHLLYY 593
           +GIIT  + Y   F   ++ +I  ++ I  L FF++ I IN  LL Y
Sbjct: 63  VGIITGIKPYIAFFFIPVWSAIADKYRISRLLFFISTIAINLGLLSY 109


>SB_39464| Best HMM Match : 7tm_1 (HMM E-Value=4e-39)
          Length = 375

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 564 ILINFHLLYYTTYYVKTIQNYRPLLTYY 647
           ILI + LLY  TY V  + N   LLT Y
Sbjct: 28  ILIGYSLLYLVTYIVAVLGNIMALLTCY 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,972,958
Number of Sequences: 59808
Number of extensions: 296848
Number of successful extensions: 519
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)