Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E12
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)   131   5e-31
SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)                   29   5.4  
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_16289| Best HMM Match : Phage_integrase (HMM E-Value=0.4)           28   9.5  
SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)                 28   9.5  
SB_11116| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)
          Length = 303

 Score =  131 bits (317), Expect = 5e-31
 Identities = 64/151 (42%), Positives = 93/151 (61%), Gaps = 3/151 (1%)
 Frame = +3

Query: 285 KMFDDLLPEVIMTLQNKSKLSEVPQIGD---WLKKMLHYNLVGGKHTRGITTVISYKTIE 455
           K+FDD  P  +  L  + +      IGD   WL+++L YN+ GGK  RG++ + S + + 
Sbjct: 19  KLFDDAFPGFVNDLVQEEENDLA--IGDSIKWLREVLEYNVPGGKRNRGLSVIGSLRHLI 76

Query: 456 KPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMPCWYRRPEVGITCAFND 635
           + E  T+  L++A  LGWCVE FQA+ +V DDIMD S  RRG PCWYR+PEVG   A ND
Sbjct: 77  REEHFTDEHLRVALLLGWCVEWFQAFFLVADDIMDQSMTRRGQPCWYRQPEVG-NIAIND 135

Query: 636 SLLIHSSLFEFLKTNFRTNPNYMKMFELFNE 728
            ++I  ++F  LK + +    Y+ + ELF+E
Sbjct: 136 GIMIEQTVFRLLKKHIKHQSYYVDVVELFHE 166


>SB_49599| Best HMM Match : DDE (HMM E-Value=3.7e-20)
          Length = 428

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
 Frame = +3

Query: 300 LLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGGKHTRGITTVISYKTIEK-PEKVTE 476
           ++ E +M +  +  L+E      WL+K    + +G +   G    ++ +T+E   E+  E
Sbjct: 98  MIQEEVMIIAERLGLNEFTGSNGWLEKFKRQHNIGQRAVSGEEAGVNPETVESWKERARE 157

Query: 477 HTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRRGMPC 590
            T     K  W V+  +  C+    + + S   RGM C
Sbjct: 158 ITRGWDAKNVWNVD--ETGCL-WRGLPEKSLNERGMRC 192


>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +3

Query: 276 NEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHYNLVGGKHT 416
           N+ K F  L  EV   +Q+K       Q  DWL+KML  N+  G  T
Sbjct: 10  NKHKSFG-LTAEVNRKIQSKYDTELEMQCRDWLEKMLGENIEWGVET 55


>SB_16289| Best HMM Match : Phage_integrase (HMM E-Value=0.4)
          Length = 158

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = +3

Query: 171 LKFTRKVTYKYWPQLIRYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSE 350
           LKF+R   +    +L  Y+N+   +   +   E +   K+     P  +++ Q   K   
Sbjct: 16  LKFSRPSKHFGRLELKAYENDK-RLCVVTIIKEYVERTKLLRGNDPRFLISFQKPHKPIS 74

Query: 351 VPQIGDWLKKML 386
              IG WLKK+L
Sbjct: 75  TDTIGRWLKKVL 86


>SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)
          Length = 1241

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/56 (19%), Positives = 29/56 (51%)
 Frame = +3

Query: 198 KYWPQLIRYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIG 365
           ++W  + + KN+   +     +  II++ K+  +LL +   ++     L+++P +G
Sbjct: 375 RFWSYIKQLKNDDPGVADFKVDDRIISDGKLKSELLSKQFCSVFTVEDLTDIPSVG 430


>SB_11116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1661

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -3

Query: 609 LPDADTNRACRVGRLNHP*CHPAQCNMPET 520
           +PD    RA R GR   P CHPA  N P T
Sbjct: 886 VPDGTIQRA-RTGRGPDPLCHPAFANDPLT 914


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,329,947
Number of Sequences: 59808
Number of extensions: 481878
Number of successful extensions: 1268
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)