Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_E12
(758 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g17190.1 68417.m02586 farnesyl pyrophosphate synthetase 2 (FP... 138 3e-33
At5g47770.1 68418.m05901 farnesyl pyrophosphate synthetase 1, mi... 137 6e-33
At4g17190.2 68417.m02585 farnesyl pyrophosphate synthetase 2 (FP... 68 8e-12
At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS) id... 33 0.16
At1g17050.1 68414.m02073 geranyl diphosphate synthase, putative ... 33 0.27
At5g22290.1 68418.m02599 no apical meristem (NAM) family protein... 28 7.7
At5g02340.1 68418.m00157 DC1 domain-containing protein contains ... 28 7.7
At2g44880.1 68415.m05587 pentatricopeptide (PPR) repeat-containi... 28 7.7
At1g32230.2 68414.m03965 WWE domain-containing protein / ceo pro... 28 7.7
At1g32230.1 68414.m03964 WWE domain-containing protein / ceo pro... 28 7.7
>At4g17190.1 68417.m02586 farnesyl pyrophosphate synthetase 2 (FPS2)
/ FPP synthetase 2 / farnesyl diphosphate synthase 2
identical to SP|Q43315 Farnesyl pyrophosphate synthetase
2 (FPP synthetase 2) (FPS 2) (Farnesyl diphosphate
synthetase 2) [Includes: Dimethylallyltransferase (EC
2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)]
{Arabidopsis thaliana}
Length = 342
Score = 138 bits (335), Expect = 3e-33
Identities = 59/126 (46%), Positives = 88/126 (69%)
Frame = +3
Query: 369 WLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLD 548
WL++ML YN+ GGK RG++ V SYK +++ + +TE ++C LGWC+E QAY +VLD
Sbjct: 34 WLERMLDYNVRGGKLNRGLSVVDSYKLLKQGQDLTEKETFLSCALGWCIEWLQAYFLVLD 93
Query: 549 DIMDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFNE 728
DIMD S RRG PCW+R+P+VG+ A ND +L+ + + LK +FR P Y+ + +LFNE
Sbjct: 94 DIMDNSVTRRGQPCWFRKPKVGM-IAINDGILLRNHIHRILKKHFREMPYYVDLVDLFNE 152
Query: 729 TXWRTS 746
++T+
Sbjct: 153 VEFQTA 158
>At5g47770.1 68418.m05901 farnesyl pyrophosphate synthetase 1,
mitochondrial (FPS1) / FPP synthetase 1 / farnesyl
diphosphate synthase 1 identical to SP|Q09152 Farnesyl
pyrophosphate synthetase 1, mitochondrial precursor (FPP
synthetase 1) (FPS 1) (Farnesyl diphosphate synthetase
1) [Includes: Dimethylallyltransferase (EC 2.5.1.1);
Geranyltranstransferase (EC 2.5.1.10)] {Arabidopsis
thaliana}
Length = 384
Score = 137 bits (332), Expect = 6e-33
Identities = 69/178 (38%), Positives = 106/178 (59%)
Frame = +3
Query: 213 LIRYKNNSANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVPQIGDWLKKMLHY 392
L R + S++M T K+ + + DLL + N+S+L W+ +ML Y
Sbjct: 32 LYRRRIQSSSMETDLKSTFLNVYSVLKSDLLHDPSFEFTNESRL--------WVDRMLDY 83
Query: 393 NLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSV 572
N+ GGK RG++ V S+K +++ +TE + ++C LGWC+E QAY +VLDDIMD S
Sbjct: 84 NVRGGKLNRGLSVVDSFKLLKQGNDLTEQEVFLSCALGWCIEWLQAYFLVLDDIMDNSVT 143
Query: 573 RRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFNETXWRTS 746
RRG PCW+R P+VG+ A ND +L+ + + LK +FR P Y+ + +LFNE +T+
Sbjct: 144 RRGQPCWFRVPQVGMV-AINDGILLRNHIHRILKKHFRDKPYYVDLVDLFNEVELQTA 200
>At4g17190.2 68417.m02585 farnesyl pyrophosphate synthetase 2 (FPS2)
/ FPP synthetase 2 / farnesyl diphosphate synthase 2
identical to SP|Q43315 Farnesyl pyrophosphate synthetase
2 (FPP synthetase 2) (FPS 2) (Farnesyl diphosphate
synthetase 2) [Includes: Dimethylallyltransferase (EC
2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)]
{Arabidopsis thaliana}
Length = 247
Score = 67.7 bits (158), Expect = 8e-12
Identities = 28/64 (43%), Positives = 43/64 (67%)
Frame = +3
Query: 555 MDGSSVRRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFLKTNFRTNPNYMKMFELFNETX 734
MD S RRG PCW+R+P+VG+ A ND +L+ + + LK +FR P Y+ + +LFNE
Sbjct: 1 MDNSVTRRGQPCWFRKPKVGM-IAINDGILLRNHIHRILKKHFREMPYYVDLVDLFNEVE 59
Query: 735 WRTS 746
++T+
Sbjct: 60 FQTA 63
>At1g78510.1 68414.m09151 solanesyl diphosphate synthase (SPS)
identical to solanesyl diphosphate synthase [Arabidopsis
thaliana] GI:19911233; contains Pfam profile PF00348:
Polyprenyl synthetase
Length = 406
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +3
Query: 402 GGKHTR-GITTVISYKTIEKP---EKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSS 569
GGK R G+ ++S+ T E E TEH +L +EM ++ DD++D S
Sbjct: 124 GGKRMRPGLVFLVSHATAELAGLKELTTEHR-----RLAEIIEMIHTASLIHDDVLDESD 178
Query: 570 VRRG 581
+RRG
Sbjct: 179 MRRG 182
>At1g17050.1 68414.m02073 geranyl diphosphate synthase, putative /
GPPS, putative / dimethylallyltransferase, putative /
prenyl transferase, putative similar to GI:11322965;
Except for first 55 amino acids, 52% identical to Prenyl
transferase (Cyanophora paradoxa) (gi 99282). Location
of est 120E9T7 (gb|T43950)
Length = 417
Score = 32.7 bits (71), Expect = 0.27
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 402 GGKHTR-GITTVISYKTIEKPEKVTEHTLKMACKLGWCVEMFQAYCIVLDDIMDGSSVRR 578
GGK R G+ ++S T E + E T++ +LG +EM ++ DD++D S +RR
Sbjct: 135 GGKRMRPGLVFLVSRATAELAG-LKELTVEHR-RLGEIIEMIHTASLIHDDVLDESDMRR 192
Query: 579 G 581
G
Sbjct: 193 G 193
>At5g22290.1 68418.m02599 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain
Length = 340
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 237 ANMTTASKNLEIINEKKMFDDLLPEVIMTLQNKSKLSEVP 356
A M +S+NL++ N++ F D+L + I+ L P
Sbjct: 219 AEMAESSENLQVDNDEDFFADILRDEIINLDEAVMTGNTP 258
>At5g02340.1 68418.m00157 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 631
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 3 VVVSPHHFLLVFSSTTPASPRLCGSQRG 86
+ +S HH ++F+S+ P++ CG RG
Sbjct: 254 IKISRHHHRIIFTSSLPSAKWSCGVCRG 281
>At2g44880.1 68415.m05587 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 555
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +3
Query: 333 KSKLSEVP--QIGDWLKKMLHYNLVGGKHTRGITTVISYKTIEKPEKVTEHTLKMACKLG 506
K E+P Q+ W M+H + G + ++ EKP+++T + AC G
Sbjct: 329 KRIFDEMPEKQVASW-NAMIHGYALNGNARAALDLFVTMMIEEKPDEITMLAVITACNHG 387
Query: 507 WCVE 518
VE
Sbjct: 388 GLVE 391
>At1g32230.2 68414.m03965 WWE domain-containing protein / ceo
protein, putative (CEO) contains Pfam domain, PF02825:
WWE domain; identical to cDNA for ceo protein (ceo gene)
GI:11044956
Length = 588
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 294 DDLLPEVIMTLQNKSKLSEVP 356
DDLL I TLQN+ K E+P
Sbjct: 555 DDLLRSTITTLQNQPKSKEIP 575
>At1g32230.1 68414.m03964 WWE domain-containing protein / ceo
protein, putative (CEO) contains Pfam domain, PF02825:
WWE domain; identical to cDNA for ceo protein (ceo gene)
GI:11044956
Length = 589
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 294 DDLLPEVIMTLQNKSKLSEVP 356
DDLL I TLQN+ K E+P
Sbjct: 556 DDLLRSTITTLQNQPKSKEIP 576
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,287,016
Number of Sequences: 28952
Number of extensions: 344154
Number of successful extensions: 919
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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