Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_E11
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 432 e-122
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 225 5e-60
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 219 3e-58
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 124 2e-29
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 123 2e-29
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 119 4e-28
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 94 2e-20
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 71 2e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 43 4e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.6
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 2.8
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 27 3.7
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 3.7
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc... 26 6.5
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 25 8.6
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 8.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 432 bits (1064), Expect = e-122
Identities = 201/226 (88%), Positives = 215/226 (95%)
Frame = +1
Query: 1 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 180
GIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIV
Sbjct: 150 GIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIV 209
Query: 181 RDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM 360
RDIKEKLCYVALDFEQE+ TAA S+SLEKSYELPDGQVITIGNERFR PEALFQPS LG+
Sbjct: 210 RDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGL 269
Query: 361 ESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKI 540
E+ GIHE YNSIMKCDVDIRKDLY N VMSGGTTMYPGIADRMQKEI ALAPS++K+KI
Sbjct: 270 ENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKI 329
Query: 541 IAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 678
+APPERKYSVWIGGSILASLSTFQQMWISK+EYDESGPGIV+RKCF
Sbjct: 330 VAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 225 bits (550), Expect = 5e-60
Identities = 102/226 (45%), Positives = 155/226 (68%)
Frame = +1
Query: 1 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 180
GIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+ ++AE+EIV
Sbjct: 155 GIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIV 214
Query: 181 RDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM 360
R+IKEK CYVA DF E+ + +Y+LPD Q IT+G E F PE LF P +G
Sbjct: 215 REIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGS 274
Query: 361 ESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKI 540
E+ G+H ++ SI+ D+D+R LY+N V+SGG+T+ G +R E+ A++ ++KI
Sbjct: 275 EASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKI 334
Query: 541 IAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 678
A PER ++ W+GGSILASLSTF+++ I+ EEY ++ ++ R+ F
Sbjct: 335 YASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 219 bits (535), Expect = 3e-58
Identities = 106/229 (46%), Positives = 155/229 (67%), Gaps = 12/229 (5%)
Frame = +1
Query: 1 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 180
G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F TA+ E V
Sbjct: 150 GVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETV 209
Query: 181 RDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM 360
R++KEKLCYV+ D E + + +T L ++Y LPDG+VI +G+ER+ CPE LFQP +G
Sbjct: 210 REMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGS 269
Query: 361 ESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITAL--------A 516
E G+ E ++++I DVDIRK LY V+SGG++MY G+ R++KEI L
Sbjct: 270 EQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGD 329
Query: 517 PSTI---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 651
P+ + K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 330 PARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 124 bits (298), Expect = 2e-29
Identities = 70/179 (39%), Positives = 97/179 (54%), Gaps = 11/179 (6%)
Frame = +1
Query: 148 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCP 327
S+ +R ++ + KE + V + A AS+ K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV---LDTPFDEAKASSRNPKPFEFPDGVTHKFGQERFRIS 299
Query: 328 EALFQPSFLGMESC---------GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 480
E LF PSF S G+HE VY SI+ CD ++R L N V++GGT++ PG+
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGL 359
Query: 481 ADRMQKEITALAP-STIKIKII-APPERKYSVWIGGSILASLSTFQQMWISKEEYDESG 651
++R+Q E+ LA S I + +VW GGSILASL FQ +W+SK+EYDE G
Sbjct: 360 SERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 123 bits (297), Expect = 2e-29
Identities = 79/244 (32%), Positives = 122/244 (50%), Gaps = 21/244 (8%)
Frame = +1
Query: 1 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAERE 174
G V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER
Sbjct: 181 GTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER- 239
Query: 175 IVRDIKEKLCYVALDFEQEMA--TAAASTSLEKSYELPDGQ--VITIGNERFRCPEALFQ 342
IKE+ CYV D +E + L+ + E G I +G ERF PE F
Sbjct: 240 ----IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFN 295
Query: 343 PSFLGME-SCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAP 519
P + + E V N + +D+RK LY N V+SGG+T++ +R+Q+++ +
Sbjct: 296 PEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVD 355
Query: 520 STI--------------KIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPG 657
I + +I+ ++ +VW GGS+LA F +K +Y+E G
Sbjct: 356 ERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGAS 415
Query: 658 IVHR 669
I R
Sbjct: 416 IARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 119 bits (287), Expect = 4e-28
Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 20/243 (8%)
Frame = +1
Query: 4 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 183
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNMME--ETYIVN 216
Query: 184 DIKEKLCYVALDFEQEMATAAAS--TSLEKSYELPD------------------GQVITI 303
+IKE +CYV+ +F+++M + LE Y LPD QV+ +
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNL 276
Query: 304 GNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIA 483
NERF PE LF PS + + GI E V S+ +I+ L N V GG +PG
Sbjct: 277 SNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFH 336
Query: 484 DRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIV 663
R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E G I+
Sbjct: 337 KRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIM 395
Query: 664 HRK 672
RK
Sbjct: 396 TRK 398
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 93.9 bits (223), Expect = 2e-20
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Frame = +1
Query: 370 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 549
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 550 P---ERKYSVWIGGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 675
ER Y+ W+GGSIL+SL TF Q+WIS++EY+E G ++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 70.9 bits (166), Expect = 2e-13
Identities = 32/115 (27%), Positives = 62/115 (53%)
Frame = +1
Query: 310 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 489
E+ R PE +F PS +G++ GI E + + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 490 MQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 654
+++E+T++ P I + W G S + F+ +++EEY E GP
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGP 708
Score = 41.1 bits (92), Expect = 2e-04
Identities = 23/89 (25%), Positives = 40/89 (44%)
Frame = +1
Query: 1 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 180
GIVL+ G+ SH +P+ G + R+ G + YL+K+ + SF
Sbjct: 167 GIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPSQA 226
Query: 181 RDIKEKLCYVALDFEQEMATAAASTSLEK 267
+ C+V+ D+ ++A A LE+
Sbjct: 227 ELLMHDHCHVSSDYTHDIAHALDRDILER 255
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 43.2 bits (97), Expect = 4e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +1
Query: 424 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 594
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 595 SLSTFQQMWISKEEYDESGPGIVHRK 672
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +1
Query: 7 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 153
V+D G + + EG +P++ ++++ G D+T MK+L + +
Sbjct: 295 VVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +1
Query: 571 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 672
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 496 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 606
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +3
Query: 3 YRARLRRWCLPHRTHLRRLRSAPRHPPSGLGWSRLDRLPHEDPH 134
Y +++ +C P +RS P PP+ R PH PH
Sbjct: 139 YNPQVQSYCRPEPLSSNHVRSCPPFPPTQHHHPH-TRPPHHPPH 181
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 47 STKVTLCPTPSSVWTW 94
STK CP PS W W
Sbjct: 52 STKTATCPDPSWEWAW 67
>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 288
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 2 VSCSTPEMVSPTPYPS 49
+SCS+PEMV+ T PS
Sbjct: 222 LSCSSPEMVATTQLPS 237
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 11 STPEMVSPTPYPSTKVTLCPTPSS 82
+ P+ V+ P+P T TL TPS+
Sbjct: 241 TAPDQVALPPFPDTNSTLTYTPSN 264
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 375 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 503
PR+ V R+R P P + R V PR RRQ +G+
Sbjct: 41 PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,768,172
Number of Sequences: 5004
Number of extensions: 53876
Number of successful extensions: 214
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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