Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_E10
(737 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 265 2e-71
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3) 29 3.0
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 3.9
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0) 29 3.9
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 28 6.9
SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15) 28 6.9
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 28 9.1
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 265 bits (650), Expect = 2e-71
Identities = 124/210 (59%), Positives = 149/210 (70%)
Frame = +1
Query: 106 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 285
ARP+++V++E E+ LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59
Query: 286 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXX 465
SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 60 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRF 119
Query: 466 XXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILK 645
ARGH IEKI E+PLV++D ++ + KT AV L+ + A+ D+ K
Sbjct: 120 AVCSALAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEK 179
Query: 646 VYKSXRLRAGKGKMRNRRRIXRKGPLIIFN 735
S ++RAGKGKMRNRR + RKGPLII+N
Sbjct: 180 CIDSKKIRAGKGKMRNRRTVMRKGPLIIYN 209
>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 501
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 353 WVPPPRTRGIRATARPVPHD 294
W+PP RTR R T PV H+
Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247
>SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3)
Length = 532
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 231 VQELEAALLREQGGWSPNQCRIMGYRTCCRPNSSCPWWW 347
+ E A L+ G P++ I+ +R CCR N C W+W
Sbjct: 221 ITEAAAVLIVVNGTGVPDRL-IVSFRGCCRVN--CNWYW 256
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 283 TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 399
T +E +G ++ R PR RGGG G G G RGGR
Sbjct: 983 TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2325
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 202 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARI 327
D+ NDV ++++ + PY + H T E TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +1
Query: 301 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 429
G GR + R P GGG R G +G M GG P W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310
>SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -3
Query: 702 TTTVAHFTLTSTKTXRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVSYNQ 553
+T + HF KT R +H+K P E GL+D+LD + Q
Sbjct: 18 STVLHHFIDKHAKTPRFLHMKP-----NGPGEGGGSSGLLDMLDAAGFEQ 62
>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
Length = 715
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 196 RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTSAESWGTGRAV 318
RP +SM K R+PY + +E GH+ S T R V
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTERNV 197
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +1
Query: 298 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 429
WG G+ + R GGG R G +G M GG P W R
Sbjct: 24 WGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,076,370
Number of Sequences: 59808
Number of extensions: 456704
Number of successful extensions: 1401
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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