Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_E10
(737 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 243 8e-65
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 242 2e-64
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 2.4
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 29 3.2
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 29 3.2
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 5.6
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s... 28 5.6
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g... 27 9.8
At4g12470.1 68417.m01972 protease inhibitor/seed storage/lipid t... 27 9.8
At1g58070.1 68414.m06581 expressed protein 27 9.8
At1g18670.1 68414.m02330 protein kinase family protein contains ... 27 9.8
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 243 bits (595), Expect = 8e-65
Identities = 118/211 (55%), Positives = 139/211 (65%), Gaps = 2/211 (0%)
Frame = +1
Query: 106 ARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGH 279
ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+AGH
Sbjct: 7 ARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGH 66
Query: 280 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 459
QTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 67 QTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMK 126
Query: 460 XXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDI 639
ARGH IE +PE+PLVV+D + + KT A+ L+++ A+ D
Sbjct: 127 RHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDA 186
Query: 640 LKVYKSXRLRAGKGKMRNRRRIXRKGPLIIF 732
K S +R GKGKMRNRR I RKGPL++F
Sbjct: 187 EKAKNSIGIRPGKGKMRNRRYISRKGPLVVF 217
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 242 bits (592), Expect = 2e-64
Identities = 116/211 (54%), Positives = 141/211 (66%), Gaps = 2/211 (0%)
Frame = +1
Query: 106 ARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGH 279
ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VSK+AGH
Sbjct: 6 ARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGH 65
Query: 280 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 459
QTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 66 QTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMK 125
Query: 460 XXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDI 639
ARGH IE +PE+PLVV+D + + KT A+ L+++ A+ D
Sbjct: 126 RHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDA 185
Query: 640 LKVYKSXRLRAGKGKMRNRRRIXRKGPLIIF 732
K S +R GKGKMRNRR I RKGPL+++
Sbjct: 186 EKAKNSIGIRPGKGKMRNRRYISRKGPLVVY 216
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 115 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 261
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 390 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCC 488
WW +V LA+ APS P + L SR C
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 497
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +3
Query: 390 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCC 488
WW +V LA+ APS P + L SR C
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 496
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 166 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 261
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 166 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 261
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 596 CLVLLISWTLSATTKGSSGIFS 531
CLVLL+S +A TK SGIF+
Sbjct: 9 CLVLLVSILRAAVTKPDSGIFT 30
>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
glycine-rich protein 18 (GRP18) PMID:11431566;
Length = 228
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +1
Query: 259 VSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAPTKPW 423
+ + G + +AE + + + ++P G G G+ G FGN GG F W
Sbjct: 81 IRRRMGAKPTAEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGDISKW 138
>At4g12470.1 68417.m01972 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 161
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = -3
Query: 549 KLGNLFNNVSSSLNERWDAGSSNGCCQGRSPLSEVDATVPAPPGLR 412
KLG N +SS LN + SS CC L +VDA + LR
Sbjct: 84 KLGVCANVLSSLLNIQLGQPSSQQCCSLIQGLVDVDAAICLCTALR 129
>At1g58070.1 68414.m06581 expressed protein
Length = 284
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 416 SPGGAGTVASTSDSGERPWQQPLLLPAS 499
SP + +++ T+ S PW+Q LLP S
Sbjct: 94 SPIASPSISQTASSSSSPWKQRSLLPPS 121
>At1g18670.1 68414.m02330 protein kinase family protein contains
Protein kinases ATP-binding region signature,
PROSITE:PS00107 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 662
Score = 27.5 bits (58), Expect = 9.8
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +3
Query: 435 PSRQPPTAESGLGSS--RCCYRRPSARSG*RTHY*KDSRASLGCS*QSPGDQQDQTGCHL 608
P+R+PP + R ++ R+G H DS ++L Q P + + H+
Sbjct: 465 PTRKPPAFAKLAPAEDVRHHSQKFQKRNGHSVHNSIDSDSTLFEKMQKPSNHEKDEASHV 524
Query: 609 PEAPQGMV*YP*GVQVSXSS 668
A QG V + +QVS SS
Sbjct: 525 KNASQGDVPFSGPLQVSVSS 544
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,177,012
Number of Sequences: 28952
Number of extensions: 317410
Number of successful extensions: 1009
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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