Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_E07
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0809 - 21426670-21426753,21427188-21427317,21427403-214274... 151 5e-37
08_01_1061 - 10804269-10804352,10804464-10804593,10804696-108047... 81 8e-16
03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922 31 0.66
03_03_0267 + 16041974-16042549 31 1.1
10_08_0598 + 19093417-19094220 28 8.1
08_02_0216 + 14390739-14390847,14390983-14391017,14391112-143911... 28 8.1
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 28 8.1
>08_02_0809 -
21426670-21426753,21427188-21427317,21427403-21427452,
21428209-21428349,21428907-21429047,21429144-21429251
Length = 217
Score = 151 bits (366), Expect = 5e-37
Identities = 78/176 (44%), Positives = 103/176 (58%), Gaps = 1/176 (0%)
Frame = +2
Query: 161 VTCGSILKLINTDLKLRLHSHDVKYGSGSGQQSVTAVEVSDDNNSHWLVRPMTGETCKRG 340
V GS +KL++ K RLHSHDV YGSGSGQQSVT DD+NS+W+VRP + K+G
Sbjct: 37 VAYGSTIKLMHEKTKHRLHSHDVPYGSGSGQQSVTGFPEVDDSNSYWIVRPSPDSSAKQG 96
Query: 341 APIKCNTNIRLQHVATKKNLHSHFFTSPLSGNQEVSCY-XXXXXXXXXXXNWTVVCNNDY 517
I+ + IRLQH+ T+K LHSH SPLSGN EVSC+ +
Sbjct: 97 DAIETGSIIRLQHMRTRKWLHSHLHASPLSGNLEVSCFGGDGQSDTGDYWRLEIEGGGKL 156
Query: 518 WRRDTPVKFRHVDTGSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQASEGLFV 685
W++D V+ RHVDTG YL + + R GQ E+ GV + A W A+EG+++
Sbjct: 157 WKQDQKVRLRHVDTGGYLHSHNKKYNRLGGGQQEVCGVREK-RAENIWLATEGVYL 211
Score = 35.1 bits (77), Expect = 0.053
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Frame = +2
Query: 128 SEKTEAVKNEFVTCGSILKLINTDLKLRLHSH-DVKYGSGSGQQSVTAVEVSDDNNSHWL 304
S + A + + + GSI++L + + LHSH SG+ + S + D +W
Sbjct: 88 SPDSSAKQGDAIETGSIIRLQHMRTRKWLHSHLHASPLSGNLEVSCFGGDGQSDTGDYWR 147
Query: 305 VRPMTGETCKRGAPIKCNTNIRLQHVATKKNLHSHFFT-SPLSGNQEVSC 451
+ G G K + +RL+HV T LHSH + L G Q+ C
Sbjct: 148 LEIEGG-----GKLWKQDQKVRLRHVDTGGYLHSHNKKYNRLGGGQQEVC 192
>08_01_1061 -
10804269-10804352,10804464-10804593,10804696-10804745,
10805154-10805216,10806235-10806375,10806541-10806925,
10807735-10808339
Length = 485
Score = 81.0 bits (191), Expect = 8e-16
Identities = 37/67 (55%), Positives = 47/67 (70%)
Frame = +2
Query: 161 VTCGSILKLINTDLKLRLHSHDVKYGSGSGQQSVTAVEVSDDNNSHWLVRPMTGETCKRG 340
+T GS +KL++ K RLHSHDV YGSGSGQQSVT+ DD+NS+W+VRP + K+G
Sbjct: 331 ITYGSAIKLMHERTKFRLHSHDVPYGSGSGQQSVTSFPNVDDSNSYWIVRPQPDTSAKQG 390
Query: 341 APIKCNT 361
PI T
Sbjct: 391 DPITHGT 397
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +2
Query: 518 WRRDTPVKFRHVDTGSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQASEGLFV 685
WR++ ++ RHVDTG YL R + R GQ E+ GV + W A+EG+++
Sbjct: 425 WRQNQKIRLRHVDTGGYLHSHDRKYTRIAGGQQEVCGVGDKRPDNV-WLAAEGVYL 479
>03_03_0268 + 16047211-16047213,16047349-16047547,16047681-16047922
Length = 147
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +2
Query: 560 GSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQASEGLFVHP 691
G + G+G F P+ G +VG ++ G Y + S G++VHP
Sbjct: 106 GPFGNGAGTPFAVPVLNNGSVVGFFARAGPYLE---SIGIYVHP 146
>03_03_0267 + 16041974-16042549
Length = 191
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 560 GSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQASEGLFVHP 691
G + G+G F P+ G G +VG + GAY + + G++V+P
Sbjct: 145 GPFGYGAGTPFSVPVRGDGGVVGFFVRAGAYLE---AIGVYVNP 185
>10_08_0598 + 19093417-19094220
Length = 267
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 420 HPSLAIKRYHVMETMRAKETVETIGLWSATMTTGGEIHQ*NLDMLILDRILQAPGEHLVV 599
H A H E R V + W+AT +GGE + + +++ +L A GE L +
Sbjct: 13 HARTASHPCHYPELARLDGGVRELMSWTATSRSGGE---GSSGLALVEAVLAALGEVLEL 69
Query: 600 PSMVKA 617
P V A
Sbjct: 70 PVAVAA 75
>08_02_0216 +
14390739-14390847,14390983-14391017,14391112-14391153,
14391253-14391346,14391476-14391672,14392407-14392424,
14392938-14393182,14393300-14393657,14393741-14394316,
14395172-14395447
Length = 649
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 210 LNFKSVLMSFNIDPHVTNSFFTASVFSLKIEMRNTTVTKV 91
LNF + ++ N DPH F +VF L E R +T++
Sbjct: 513 LNFSNPVIVKNFDPHACGWAFGMNVFDL-AEWRRQNITEI 551
>02_01_0084 -
573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 559 SINMSKFYWCISPPVVIVADHSPIVSTVSFALIV 458
SIN +WC S V+V D + T+ F L V
Sbjct: 499 SINQLLEFWCKSHGAVLVDDKEYVTKTILFTLTV 532
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,418,532
Number of Sequences: 37544
Number of extensions: 370968
Number of successful extensions: 851
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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