Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E07
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2891| Best HMM Match : PAN (HMM E-Value=4.4e-05)                   105   4e-23
SB_51899| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_5050| Best HMM Match : SSF (HMM E-Value=0.001)                      28   6.2  
SB_5049| Best HMM Match : SSF (HMM E-Value=0.26)                       28   6.2  
SB_59044| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_28365| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_9299| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  

>SB_2891| Best HMM Match : PAN (HMM E-Value=4.4e-05)
          Length = 271

 Score =  105 bits (251), Expect = 4e-23
 Identities = 53/111 (47%), Positives = 67/111 (60%), Gaps = 5/111 (4%)
 Frame = +2

Query: 344 PIKCNTNIRLQHVATKKNLHSHFFTSPLSGNQEVSCYXXXXXXXXXXXNWTVVCNNDYWR 523
           PIKC+  IRLQH+ATK+NLHSH F SP+S NQEVS +           +W VVC+   W 
Sbjct: 3   PIKCDETIRLQHLATKRNLHSHHFQSPISHNQEVSAF-GEGGNGDNLDDWVVVCSKKNWE 61

Query: 524 RDTPVKFRHVDTGSYLAGSGRTFGRPINGQGEIVG-----VSSQYGAYTDW 661
           R   V+FRH  T  YL  +G  FGRPI+GQ E+ G     VS+++    DW
Sbjct: 62  RKDTVRFRHKITEMYLHITGDQFGRPIHGQREVSGFNYPDVSNEWKTMEDW 112


>SB_51899| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 201 KSVLMSFNIDPH-VTNSFFTASVFSLKIEMRNTTVTKVAIERIFVFSIFLEQNN 43
           + ++   N++PH +    +T S  S K+E++    T+      F F  FL QNN
Sbjct: 706 QELIQKLNLEPHPLEGGHYTVSYIS-KLEVKPLDATRRDRRSCFSFIYFLIQNN 758


>SB_5050| Best HMM Match : SSF (HMM E-Value=0.001)
          Length = 364

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 183 FNIDPHVTNSFFTASVFSLKIEMRNTTVTKVAIER 79
           FN DP V N+F+T ++      M   TV++ A++R
Sbjct: 206 FNPDPKVRNTFWTLTIGGAFTAMPVWTVSQTAVQR 240


>SB_5049| Best HMM Match : SSF (HMM E-Value=0.26)
          Length = 442

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 183 FNIDPHVTNSFFTASVFSLKIEMRNTTVTKVAIER 79
           FN DP V N+F+T ++      M   TV++ A++R
Sbjct: 98  FNPDPKVRNTFWTLTIGGAFTAMPVWTVSQTAVQR 132


>SB_59044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 562 SSINMSKFYWCISPPVVIVADHSPIVSTVSFA 467
           S  N+S++YWC   PV++V    PI +++S A
Sbjct: 4   SGANISQYYWCQYQPVLLV----PISASISGA 31


>SB_28365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 562 SSINMSKFYWCISPPVVIVADHSPIVSTVSFA 467
           S  N+S++YWC   PV++V    PI +++S A
Sbjct: 50  SGANISQYYWCQYQPVLLV----PISASISGA 77


>SB_9299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1135

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +2

Query: 230  KYGSGSGQQSVTAVEVSDDNNSHWLVRPMTGETCKRGAPIKCNTNIRLQHVATKKNLHS- 406
            K   G+ Q +  AVE +++  +++  R    + C+   PI+ N  I L H+ ++  L S 
Sbjct: 1052 KMSEGTAQDA-EAVEAAEEETAYFRTRAAILDECQLSHPIEAN-GIDLCHLYSRSRLTSL 1109

Query: 407  HFFTSPLS 430
               T PLS
Sbjct: 1110 SVATLPLS 1117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,566,104
Number of Sequences: 59808
Number of extensions: 435277
Number of successful extensions: 992
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)