Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E07
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067219-14|AAC17034.1|  206|Caenorhabditis elegans Hypothetical...   190   8e-49
AF016687-11|ABL01528.1|  646|Caenorhabditis elegans Hypothetical...    32   0.45 
CU457737-1|CAM36322.1|  373|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF016682-11|AAB66190.2|  270|Caenorhabditis elegans Hypothetical...    28   5.5  
U00046-4|AAC47043.2|  308|Caenorhabditis elegans Serpentine rece...    27   9.6  

>AF067219-14|AAC17034.1|  206|Caenorhabditis elegans Hypothetical
           protein R12E2.13 protein.
          Length = 206

 Score =  190 bits (463), Expect = 8e-49
 Identities = 94/178 (52%), Positives = 116/178 (65%), Gaps = 1/178 (0%)
 Frame = +2

Query: 155 EFVTCGSILKLINTDLKLRLHSHDVKYGSGSGQQSVTAVEVSDDNNSHWLVRPMTGETCK 334
           +FVTC S+LK IN +   RLHSHDVKYGSGSGQQSVTAV+ SDD NSHW + P     C 
Sbjct: 24  DFVTCYSVLKFINANDGSRLHSHDVKYGSGSGQQSVTAVKNSDDINSHWQIFPALNAKCN 83

Query: 335 RGAPIKCNTNIRLQHVATKKNLHSHFFTSPLS-GNQEVSCYXXXXXXXXXXXNWTVVCNN 511
           RG  IKC   IRL+H+ T   LHSH FT+PLS  +QEVS +           +WTV+CN 
Sbjct: 84  RGDAIKCGDKIRLKHLTTGTFLHSHHFTAPLSKQHQEVSAF-GSEAESDTGDDWTVICNG 142

Query: 512 DYWRRDTPVKFRHVDTGSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQASEGLFV 685
           D W      K RH  TGSYL+ SG+ FGRPI+GQ E+VG  S  G  + W+ +EG+++
Sbjct: 143 DEWLESEQFKLRHAVTGSYLSLSGQQFGRPIHGQREVVGTDSITGG-SAWKVAEGIYI 199


>AF016687-11|ABL01528.1|  646|Caenorhabditis elegans Hypothetical
           protein T21D12.7 protein.
          Length = 646

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 628 SDNLALTIDGTTKCSPGACKIRSSINMSKFYWCISPPVVIVADHSPIVSTV 476
           S    L  D  T C  G C+      M   Y+C  PP++I+ +++PIV  V
Sbjct: 554 SPKTCLGWDDNTTCPQGKCQKA----MDGVYYCCRPPMMILQNNAPIVPQV 600


>CU457737-1|CAM36322.1|  373|Caenorhabditis elegans Hypothetical
           protein C52D10.1 protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +2

Query: 80  LSIATLVTVVFLISILSEKT-EAVKNEFVTCGSILKLINTDLKLRLHSHDVKYGSGSGQQ 256
           +S +TL+T   LIS+ S K  ++VK        I K  +  +K+ + S ++K  S S   
Sbjct: 270 MSKSTLMTHEQLISVRSAKVRQSVK--ITVKEQIPKSHDDKIKVSIVSPEIKSSSSSKNS 327

Query: 257 SVTAVEVSDDNNSHWLV 307
           S     ++ D+N  W V
Sbjct: 328 SPPDARLNKDHNLEWCV 344


>AF016682-11|AAB66190.2|  270|Caenorhabditis elegans Hypothetical
           protein T07D3.1 protein.
          Length = 270

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 128 SEKTEAVKNEFVTCGSILKLINTDLKLRLHSHDVKYG 238
           S+ TE    +F+  G  ++L N DLKL L +  V  G
Sbjct: 55  SDDTEPTWEKFIEGGKSIQLCNNDLKLVLENRRVTLG 91


>U00046-4|AAC47043.2|  308|Caenorhabditis elegans Serpentine
           receptor, class v protein1 protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -2

Query: 132 SLKIEMRNTTVTKVA--IERIFVFSIFLEQNNPANPKNTP 19
           ++ IE  +T ++ V   I  +FV+ +F+E+N P  P NTP
Sbjct: 9   AITIEYVSTAISLVCLPINILFVYILFVERNRP--PYNTP 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,092,159
Number of Sequences: 27780
Number of extensions: 331824
Number of successful extensions: 915
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)