Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E07
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.6  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   8.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.4  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 543 LDMLILDRILQAPGEHLVVPSMVKARLSE*VHNMVLTLTGKQVKVSLFI 689
           LD +    IL  PG+HL V +  ++ L E +   V T     V + L I
Sbjct: 741 LDDIASMEILYKPGDHLGVFACNRSELVEAILKRVQTPFDPDVPIELQI 789


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 450 HDTS*LPERGEVKKC 406
           H+   LPERGE+  C
Sbjct: 303 HEFQILPERGELGHC 317


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -3

Query: 311 GEPASDYCYHQRPQPPSQTAVLIQTHTLHHANEV 210
           G PA+     Q P   S  A+    H  HH  E+
Sbjct: 446 GSPATTAAPPQLPTEESVDALCNTLHHWHHCPEI 479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,430
Number of Sequences: 438
Number of extensions: 3777
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)