Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E07
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25110.1 68415.m03004 MIR domain-containing protein similar t...   150   7e-37
At4g37380.1 68417.m05293 pentatricopeptide (PPR) repeat-containi...    29   2.2  
At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein...    29   2.9  
At2g30575.1 68415.m03725 glycosyl transferase family 8 protein c...    29   2.9  
At5g61020.2 68418.m07656 YT521-B-like family protein contains Pf...    29   3.9  
At5g61020.1 68418.m07655 YT521-B-like family protein contains Pf...    29   3.9  
At1g72440.1 68414.m08377 CCAAT-box-binding transcription factor-...    28   6.8  

>At2g25110.1 68415.m03004 MIR domain-containing protein similar to
           SP|Q99470 Stromal cell-derived factor 2 precursor
           (SDF-2) {Homo sapiens}; contains Pfam profile PF02815:
           MIR domain
          Length = 218

 Score =  150 bits (364), Expect = 7e-37
 Identities = 74/177 (41%), Positives = 107/177 (60%), Gaps = 2/177 (1%)
 Frame = +2

Query: 161 VTCGSILKLINTDLKLRLHSHDVKYGSGSGQQSVTAVEVSDDNNSHWLVRPMTGETCKRG 340
           +T GS +KL++   K RLHSHDV YGSGSGQQSVT      D+NS+W+V+P+ G T K+G
Sbjct: 37  ITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQG 96

Query: 341 APIKCNTNIRLQHVATKKNLHSHFFTSPLSGNQEVSCYXXXXXXXXXXXNWTVVC--NND 514
             +K    IRLQH+ T+K LHSH   SP+SGN EVSC+           +W ++   +  
Sbjct: 97  DAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCF-GDDTNSDTGDHWKLIIEGSGK 155

Query: 515 YWRRDTPVKFRHVDTGSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTDWQASEGLFV 685
            W++D  V+ +H+DT  YL    + + R   GQ E+ G+  +  A   W A+EG+++
Sbjct: 156 TWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEVCGIREK-KADNIWLAAEGVYL 211


>At4g37380.1 68417.m05293 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 632

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +2

Query: 83  SIATLVTVVFLISILSEKTEAVKNEFVTCGSILKLINTDLKLRLHSHDVKYGSG 244
           SI  L    FL+ +    +E   NEF T  S+LK  +T     +H+H +K+G G
Sbjct: 106 SINGLKDQAFLLYVQLLSSEINPNEF-TFSSLLKSCSTKSGKLIHTHVLKFGLG 158


>At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein 1
           (SOL1) identical to CXC domain containing TSO1-like
           protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427;
           contains Pfam profile PF03638: Tesmin/TSO1-like CXC
           domain; supporting cDNA
           gi|7767426|gb|AF205142.1|AF205142
          Length = 609

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 125 LSEKTEAVKNEFVTCGSILKLINTDLKLRLHS-HDVKYGSGSGQQSVTAVEV 277
           +S K + V NE+   G+I   + + L   LHS HD+   + SG+ S   +EV
Sbjct: 244 MSSKDKNVANEYSFSGNIKVGVQSSLTPVLHSQHDIVRENESGKDSGQIIEV 295


>At2g30575.1 68415.m03725 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 610

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -2

Query: 258 DCCPDPDPYFTSCE*SLNFKSVLMSFNIDPHVTNSFFTASVFSLKIEMRNTTVTKVAIE 82
           + C + DP + S +  +NF    +S   DP      F  ++F L+ E R   +T V ++
Sbjct: 458 ETCLEGDPSYRSMDSFINFSDAWVSQKFDPKACTWAFGMNLFDLE-EWRRQELTSVYLK 515


>At5g61020.2 68418.m07656 YT521-B-like family protein contains Pfam
           profile PF04146: YT521-B-like family
          Length = 493

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 545 RHVDTGSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTD 658
           RH  TGSY +G      + +  QG   G    YG Y D
Sbjct: 106 RHGYTGSYASGKTNLQYQYLTQQGRSAGNGQSYGGYMD 143


>At5g61020.1 68418.m07655 YT521-B-like family protein contains Pfam
           profile PF04146: YT521-B-like family
          Length = 495

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 545 RHVDTGSYLAGSGRTFGRPINGQGEIVGVSSQYGAYTD 658
           RH  TGSY +G      + +  QG   G    YG Y D
Sbjct: 108 RHGYTGSYASGKTNLQYQYLTQQGRSAGNGQSYGGYMD 145


>At1g72440.1 68414.m08377 CCAAT-box-binding transcription
           factor-related similar to CCAAT-box-binding
           transcription factor (CCAAT-binding factor) (CBF)
           (Swiss-Prot:Q03701) [Homo sapiens], GB:P53569 [Mus
           musculus]
          Length = 1056

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 665 LASQCKHHIVNSLRQSRLDH*WDDQMFARSLQD 567
           L  + K+H VN L Q RL H  +D   A+ L D
Sbjct: 408 LGLRAKYHAVNFLSQIRLSHKGEDPKVAKRLID 440


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,912,751
Number of Sequences: 28952
Number of extensions: 299423
Number of successful extensions: 752
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)