Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E06
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   178   6e-46
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    28   1.3  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   3.0  
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po...    26   4.0  
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    25   6.9  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   6.9  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    25   6.9  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  178 bits (433), Expect = 6e-46
 Identities = 91/152 (59%), Positives = 109/152 (71%), Gaps = 3/152 (1%)
 Frame = +2

Query: 170 KAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGL-TKGKHGFHVHEFGDNTNGCTSAG 340
           +AV VLRGD  VSG V F+Q D+ S V V  ++ G     K GFH+H+FGDNTNGCTSAG
Sbjct: 3   RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62

Query: 341 AHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVVH 520
            HFNPE + HG  ++AVRHVGDLGN+E+ +  G  K +  DS ISL G NSIIGRT+V+H
Sbjct: 63  PHFNPEGKTHGDRTAAVRHVGDLGNLES-DAQGNIKTTFSDSVISLFGANSIIGRTIVIH 121

Query: 521 ADPDDLGLGGNELSKTTGNAGGRIACGVIGLA 616
           A  DDLG G +E S  TGNAG R ACGVIG+A
Sbjct: 122 AGEDDLGKGTSEESLKTGNAGARNACGVIGIA 153


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 348 STLKNKIMVVPVLLYAMSAISVTLRQLKTLESLK 449
           STLK + +  PV L A+  I ++LR L   ESL+
Sbjct: 326 STLKRRHVRAPVSLDAVDGIELSLRDLNDEESLQ 359


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +3

Query: 342  LISTLKNKIMVVPVLLYAMSAISVTLRQLKTLES-LKYQSKIPRSLFM 482
            L++T  +  + +PVLLY +  +++ +  L++ ES  + + KI  +L M
Sbjct: 1130 LLNTASHTAVKLPVLLYILDTLNLVITHLQSEESESQLREKILANLVM 1177


>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 213

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -1

Query: 328 ATVCVVTKFVHMETVFTLSQ-ALDLSRNNNR*LFILLIEENSSANIT 191
           A +C+  + VH++ V +LS+    +S N N+ L +LLI   S+   T
Sbjct: 144 AGLCIGDELVHVQNVTSLSELPTFISNNVNKTLDVLLIRGYSADGST 190


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 386 AVRHVGDLGNIEAIEDAGVTKVSIQDSQ 469
           A R   DL NI  +ED  V+  S+ DS+
Sbjct: 231 AKRERDDLKNIMQLEDESVSTTSVHDSE 258


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 327  QPFVLSPNSCTWKPCLPLVKPWTSPETT 244
            +PF L+P + +     P +KPW  P  T
Sbjct: 1190 RPFNLTPFAISLNALTPQLKPWLPPTDT 1217


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 516 TTKVRPMMLLGP*REIWESWIDTLVTP 436
           +T + P  LL    E+WE   DT +TP
Sbjct: 78  STLIEPNYLLTAWHELWEELQDTYMTP 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,250
Number of Sequences: 5004
Number of extensions: 48025
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)