Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E06
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)               173   1e-43
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)                77   1e-14
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)                54   1e-07
SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)                  32   0.34 
SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0)               30   1.8  
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         29   4.2  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score =  173 bits (420), Expect = 1e-43
 Identities = 75/128 (58%), Positives = 99/128 (77%)
 Frame = +2

Query: 230 EKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDL 409
           E  P  ++G ++GL  G HGFH+H +GDNTNGC SAG HFNP K++HGGPS   RHVGDL
Sbjct: 24  EGKPCKITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDL 83

Query: 410 GNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGNELSKTTGNAGGR 589
           GN+ A +D G   + + D+ ++L G +S++GR++VVHAD DDLG GG+E SKTTG+AGGR
Sbjct: 84  GNVVAGDD-GKACIDMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGGR 142

Query: 590 IACGVIGL 613
           +ACGVIG+
Sbjct: 143 LACGVIGI 150


>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
          Length = 100

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 38/71 (53%), Positives = 49/71 (69%)
 Frame = +2

Query: 395 HVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGNELSKTTG 574
           HVGDLGNI A ++   T    +D  + +     IIGR +VVHAD DDLG GG+ELSK+TG
Sbjct: 1   HVGDLGNIIANQNGRAT-FRFEDKTVKVW---DIIGRAIVVHADEDDLGRGGHELSKSTG 56

Query: 575 NAGGRIACGVI 607
           N+G R+ CG+I
Sbjct: 57  NSGARVGCGII 67


>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 28/49 (57%), Positives = 33/49 (67%)
 Frame = +2

Query: 368 HGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLV 514
           HG P    RH+GDLGNIEA +  G+  VSI D  +SL G  SIIGR+LV
Sbjct: 2   HGAPEDKDRHLGDLGNIEA-DANGIADVSITDCLVSLTGQCSIIGRSLV 49


>SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)
          Length = 710

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 25/93 (26%), Positives = 43/93 (46%)
 Frame = +2

Query: 284 HGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQD 463
           H  H++    + + C +  +  +  +  HGG  S++     +GN  +    G    S+ D
Sbjct: 309 HDNHLNPSSYDNHSCLANQSSLSDNQSSHGGNHSSL-----VGNQSS---HGGNHSSLDD 360

Query: 464 SQISLHGPNSIIGRTLVVHADPDDLGLGGNELS 562
           +Q SL G  SI+G     H + +  GLG N+ S
Sbjct: 361 NQSSLGGNQSILGDNQSSHGN-EKSGLGDNQSS 392



 Score = 27.9 bits (59), Expect = 7.3
 Identities = 27/110 (24%), Positives = 46/110 (41%)
 Frame = +2

Query: 227 DEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGD 406
           D +S +  +  + G  +  HG      GDN +   +  +    ++  HG   S+      
Sbjct: 360 DNQSSLGGNQSILGDNQSSHGNEKSGLGDNQSSLGNDQSSHGNDQSSHGNNQSS------ 413

Query: 407 LGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGNE 556
           LG  ++I   G  + SI D+Q SL    S +G   +   D +   LG N+
Sbjct: 414 LGGNQSI--LGGNQSSIGDNQSSLGNDQSSLGGDQISLGD-NQSSLGDNQ 460


>SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0)
          Length = 360

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 51  LCQSCASVRGFSCQTAFSSXIFFH 122
           LC+SC  +R F+C   FS  + +H
Sbjct: 10  LCRSCVLLRKFACDIRFSGSVRYH 33


>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 10/126 (7%)
 Frame = +2

Query: 170 KAVCVLRGDVSGTVFFDQQDEKSP----VVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSA 337
           KA   + G + GTV F Q    +     + ++G  + L+   H   V   G+    C + 
Sbjct: 58  KATFSMSG-IRGTVTFTQSSPNTSTNIKLALTGVNETLSWQIHDLPVIYKGNAATTCNTV 116

Query: 338 --GAHFNPEKQDHGGPSSAVRH---VGDL-GNIEAIEDAGVTKVSIQDSQISLHGPNSII 499
             G  ++P+       S+A +    VGDL G    I+   ++ V   DS + L G + I 
Sbjct: 117 ALGNLYDPDGTATAQCSAAQKKSCAVGDLRGKFGFIDGNNMSSV-FHDSNLPLTGRHGIF 175

Query: 500 GRTLVV 517
           GRTLV+
Sbjct: 176 GRTLVL 181


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 317  TNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIED 433
            T+  +SA  HF+    DH  P S V    D+  +E+  +
Sbjct: 3205 TSASSSAKVHFSNAASDHDEPQSPVNAFHDMKTLESFSE 3243


>SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1604

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 194 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHG--FHVHEFGDNTN 322
           DVSG+V  +Q   +S   V+  V G     HG  F +H    NT+
Sbjct: 44  DVSGSVTLEQSQSRSGPYVTVAVDGTRVVLHGAVFTIHNLTSNTD 88


>SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 436 WSH*SINPRFPDLSSWT*QHHWSHFSCPC 522
           WS  S N RFP    WT    WS+ + PC
Sbjct: 395 WSS-SANSRFPVDGDWTEWSTWSYCNKPC 422


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,117,932
Number of Sequences: 59808
Number of extensions: 401137
Number of successful extensions: 1112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)