Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_E06
(637 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) / ... 186 8e-48
At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla... 186 1e-47
At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z... 167 5e-42
At1g12520.1 68414.m01449 superoxide dismutase copper chaperone, ... 50 1e-06
At5g59980.1 68418.m07522 RNase P subunit p30 family protein cont... 33 0.12
At1g18560.1 68414.m02315 hAT dimerisation domain-containing prot... 31 0.48
At5g18330.1 68418.m02157 U-box domain-containing protein weak si... 30 1.1
At4g34300.1 68417.m04875 glycine-rich protein similar to auxin r... 30 1.5
At3g22250.1 68416.m02812 UDP-glucoronosyl/UDP-glucosyl transfera... 29 2.0
At1g47786.1 68414.m05316 acyl-protein thioesterase-related simil... 28 6.0
At1g34060.1 68414.m04222 alliinase family protein contains Pfam ... 28 6.0
At5g01360.1 68418.m00049 expressed protein several hypothetical ... 27 7.9
>At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) /
copper/zinc superoxide dismutase (CSD1) identical to
SWISS-PROT: P24704
Length = 152
Score = 186 bits (454), Expect = 8e-48
Identities = 90/151 (59%), Positives = 103/151 (68%), Gaps = 2/151 (1%)
Frame = +2
Query: 167 AKAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAG 340
AK V VL V+GT+FF Q+ + VSG V GL G HGFHVH GD TNGC S G
Sbjct: 2 AKGVAVLNSSEGVTGTIFFTQEGD-GVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60
Query: 341 AHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVVH 520
HFNP+ + HG P A RH GDLGNI + D G +I D QI L GPNSI+GR +VVH
Sbjct: 61 PHFNPDGKTHGAPEDANRHAGDLGNI-TVGDDGTATFTITDCQIPLTGPNSIVGRAVVVH 119
Query: 521 ADPDDLGLGGNELSKTTGNAGGRIACGVIGL 613
ADPDDLG GG+ELS TGNAGGR+ACG+IGL
Sbjct: 120 ADPDDLGKGGHELSLATGNAGGRVACGIIGL 150
>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
(SODCP) / copper/zinc superoxide dismutase (CSD2)
identical to GP:3273753:AF061519
Length = 216
Score = 186 bits (453), Expect = 1e-47
Identities = 90/158 (56%), Positives = 105/158 (66%), Gaps = 2/158 (1%)
Frame = +2
Query: 155 ITMPAKAVCVLRG--DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGC 328
++ KAV VL+G DV G V Q D+ P V+ + GLT G HGFH+HEFGD TNGC
Sbjct: 61 VSAAKKAVAVLKGTSDVEGVVTLTQ-DDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGC 119
Query: 329 TSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRT 508
S G HFNP HG P RH GDLGNI A D GV + +I D+QI L GPNS++GR
Sbjct: 120 ISTGPHFNPNNMTHGAPEDECRHAGDLGNINANAD-GVAETTIVDNQIPLTGPNSVVGRA 178
Query: 509 LVVHADPDDLGLGGNELSKTTGNAGGRIACGVIGLAXI 622
VVH DDLG GG+ELS TTGNAGGR+ACGVIGL +
Sbjct: 179 FVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGLTPL 216
>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
superoxide dismutase (CSD3) identical to copper/zinc
superoxide dismutase GI:3273755
Length = 164
Score = 167 bits (406), Expect = 5e-42
Identities = 81/150 (54%), Positives = 103/150 (68%), Gaps = 2/150 (1%)
Frame = +2
Query: 170 KAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGA 343
+AV ++ GD V G + F QD V+G++ GL+ G HGFH+H FGD TNGC S G
Sbjct: 9 RAVALIAGDNNVRGCLQF-VQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67
Query: 344 HFNPEKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVVHA 523
HFNP + HG P+ RH GDLGNI A + GV ++ I+D I L G SI+GR +VVHA
Sbjct: 68 HFNPLNRVHGPPNEEERHAGDLGNILAGSN-GVAEILIKDKHIPLSGQYSILGRAVVVHA 126
Query: 524 DPDDLGLGGNELSKTTGNAGGRIACGVIGL 613
DPDDLG GG++LSK+TGNAG R+ CG+IGL
Sbjct: 127 DPDDLGKGGHKLSKSTGNAGSRVGCGIIGL 156
>At1g12520.1 68414.m01449 superoxide dismutase copper chaperone,
putative similar to copper chaperone for superoxide
dismutase [Homo sapiens] gi|2431868|gb|AAC51764
Length = 254
Score = 50.0 bits (114), Expect = 1e-06
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Frame = +2
Query: 173 AVCVLRG-DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHF 349
AV +G D+ G V F Q + + GL+ G H + ++E+GD TNG S G+ +
Sbjct: 98 AVAEFKGPDIFGVVRFAQVSMEL-ARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLY 156
Query: 350 NPEKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHGPNSIIGRTLVVHADP 529
NP QD G +GDLG +EA + G S + ++ + +IGR +VV+
Sbjct: 157 NP-FQDQTG----TEPLGDLGTLEA-DKNGEAFYSGKKEKLKV---ADLIGRAVVVYKTD 207
Query: 530 DD 535
D+
Sbjct: 208 DN 209
>At5g59980.1 68418.m07522 RNase P subunit p30 family protein
contains Pfam PF01876: RNase P subunit p30
Length = 581
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +2
Query: 329 TSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVS 454
TS G +P K DHG P S V V ++GN E+A V + S
Sbjct: 458 TSEGGSMSPSKSDHGIPQSPV-EVNNMGNAAFEEEASVDENS 498
>At1g18560.1 68414.m02315 hAT dimerisation domain-containing protein
/ BED zinc finger domain-containing protein /
transposase-related weak similarity to Tam3-transposase
[Antirrhinum majus] GI:16064; contains Pfam profiles
PF02892: BED zinc finger, PF05699: hAT family
dimerisation domain
Length = 676
Score = 31.5 bits (68), Expect = 0.48
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 485 PNSIIGRTLVVHADPDDLGLGGNELSKT 568
P +++ TLV H+DP D+GLG ++ S +
Sbjct: 3 PKAMMDMTLVPHSDPIDIGLGSSDKSNS 30
>At5g18330.1 68418.m02157 U-box domain-containing protein weak
similarity to immediate-early fungal elicitor protein
CMPG1 [Petroselinum crispum] GI:14582198; contains Pfam
profile PF04564: U-box domain
Length = 445
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +3
Query: 339 ELISTLKNKIMVVPVLLYAMSAISVTLRQLKTLESLKYQSKIPRS 473
E I TL NKIM+ P+L+ A T + LE LK++ PR+
Sbjct: 68 EFICTLSNKIMIEPMLI----ASGQTFEKSYILEWLKHERTCPRT 108
>At4g34300.1 68417.m04875 glycine-rich protein similar to auxin
response factor 30 (GI:20145855) {Arabidopsis thaliana}
Length = 313
Score = 29.9 bits (64), Expect = 1.5
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 5/109 (4%)
Frame = +2
Query: 293 HVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQI 472
H G NG +S H + H G SS H G+ +G SI S
Sbjct: 89 HSSGTGSTHNGHSSGSNHSSGTGSTHNGHSSGSNHSSSTGSTHNNHSSGSNHSSIVGSTH 148
Query: 473 SLHGP----NSIIGRTLVVHAD-PDDLGLGGNELSKTTGNAGGRIACGV 604
HG +SI G T H+ + + G+ + T + G +IA V
Sbjct: 149 KNHGSGSNHSSIAGPTHNGHSSGSNHSSIIGSTHNHTAPSLGRKIAVTV 197
>At3g22250.1 68416.m02812 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 461
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Frame = +2
Query: 350 NPEKQDHGGPSSAVRHVGDLGNIEAIEDAGVTKVSIQDSQISLHG------PNSII 499
N +++ G + + H+G L N EA + +TK S + +S G PNS+I
Sbjct: 231 NDLNKENNGQNPQILHLGPLHNQEATNNITITKTSFWEEDMSCLGWLQEQNPNSVI 286
>At1g47786.1 68414.m05316 acyl-protein thioesterase-related similar
to hypothetical protein GB:AAD55623 GI:5903064 from
[Arabidopsis thaliana] contains similarity to
acyl-protein thioesterase-1 [Homo sapiens]
gi|9965372|gb|AAG10063
Length = 186
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 377 PSSAVRHVGDLGNIEAIEDAGVTKVS--IQDSQISLHGPNSIIGRTLVVHADPDDLGLG 547
P++ R V LG +E + ++S +QD ++SLH I HA P+ G+G
Sbjct: 89 PTAPRRPVTILGGMETNAWFDIAEISENMQDDEVSLHHAALSIANLFSDHASPNIGGMG 147
>At1g34060.1 68414.m04222 alliinase family protein contains Pfam
profiles: PF04864 allinase C-terminal domain, PF04863
alliinase EGF-like domain
Length = 463
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 512 VVHADPDDLGLGGNELSKTTGNAGGRIACGVI 607
+ H +DL L LSKTTG+AG R G++
Sbjct: 270 ITHPVDEDLSLFS--LSKTTGHAGSRFGWGLV 299
>At5g01360.1 68418.m00049 expressed protein several hypothetical
proteins - Arabidopsis thaliana
Length = 434
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -2
Query: 468 WESWIDTLVTPASSIASMLPRSPT-WRTAELGPP--*SCFSGLK 346
W +W+D+ V P + SPT R+A+ G P CF+ K
Sbjct: 298 WANWVDSTVDPNKTRVFFTTMSPTHTRSADWGKPNGTKCFNETK 341
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,215,639
Number of Sequences: 28952
Number of extensions: 272832
Number of successful extensions: 773
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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