Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_E04
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0496 + 3660103-3660315,3660601-3661803,3662950-3663078 34 0.11
07_03_1212 - 24913497-24913718,24914398-24914670 31 1.0
07_03_0429 + 18103724-18105196 28 5.4
02_05_0851 + 32215521-32215803,32216371-32217746,32217873-32217938 28 5.4
06_03_0894 - 25724257-25724349,25724998-25725543 28 7.1
06_03_0465 + 21049412-21049878,21049947-21050790,21050994-210511... 28 7.1
02_01_0325 - 2208480-2208674,2208772-2210609,2210980-2211109,221... 28 7.1
07_01_0951 - 8001093-8001344,8001475-8001990,8002057-8002209,800... 27 9.4
04_03_0652 - 18424489-18424525,18424639-18424702,18424796-184248... 27 9.4
02_01_0252 - 1657268-1657692,1657727-1658445,1658761-1659089,165... 27 9.4
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 27 9.4
>01_01_0496 + 3660103-3660315,3660601-3661803,3662950-3663078
Length = 514
Score = 33.9 bits (74), Expect = 0.11
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +1
Query: 103 GCRILSYFYGCIVRIHCR 156
GCR+ S+ Y C++R+HCR
Sbjct: 249 GCRLNSFVYTCLIRVHCR 266
>07_03_1212 - 24913497-24913718,24914398-24914670
Length = 164
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 131 AALSGSTAGVLGLTGLNGFAFYVFAVVMLWIMFLVKVGPHWS 256
AA G+ A +LG +A A++ LW MF V WS
Sbjct: 28 AAAGGAEAALLGKGRYKAWALAAIALLALWSMFAASVTIRWS 69
>07_03_0429 + 18103724-18105196
Length = 490
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 93 TMRWLSNTVVLLWLHCQDPLQVFLVSLGSMALHS 194
T W ++ + WL CQ V VSLGS+ + S
Sbjct: 273 TSLWRADDGCMAWLDCQADRSVVYVSLGSLTVIS 306
>02_05_0851 + 32215521-32215803,32216371-32217746,32217873-32217938
Length = 574
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 276 RVF*QMDSLEHYLHMYYFGRSFMGWFMFIRLY 371
R+F Q DS+ H+L Y F S + W M R Y
Sbjct: 329 RLFPQRDSVFHHLGRYLFHPSNVVWGMVTRYY 360
>06_03_0894 - 25724257-25724349,25724998-25725543
Length = 212
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 36 RNSKKTSQSLWLTVKQLSETMRWLSNTVVLLWLHCQDPLQV--FLVSLGSMAL 188
R +++T SL + ET+R T +LL C++P Q+ F VS G+M L
Sbjct: 27 RITEETISSLHYLHLVIKETLRLHPPTPLLLPRECREPCQILGFDVSKGAMVL 79
>06_03_0465 +
21049412-21049878,21049947-21050790,21050994-21051121,
21051232-21051247
Length = 484
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 163 WSHWAQWLCILRVC 204
WS WAQW C+L VC
Sbjct: 347 WSIWAQWCCLL-VC 359
>02_01_0325 -
2208480-2208674,2208772-2210609,2210980-2211109,
2211231-2211270,2211409-2211531,2211940-2212030,
2212396-2212480,2212565-2212720,2212797-2212853,
2212940-2213110,2213313-2213330,2213479-2213551,
2213754-2213839,2214348-2214466,2214542-2214641
Length = 1093
Score = 27.9 bits (59), Expect = 7.1
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 139 VRIHCRCSWSHWAQWL 186
V +H + W HWA WL
Sbjct: 78 VLVHYQSGWEHWAYWL 93
>07_01_0951 -
8001093-8001344,8001475-8001990,8002057-8002209,
8002272-8002568
Length = 405
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 129 WLHCQDPLQVFLVSLGSMA 185
WLH P V VSLGS+A
Sbjct: 250 WLHAHSPRSVLYVSLGSVA 268
>04_03_0652 -
18424489-18424525,18424639-18424702,18424796-18424869,
18425809-18425924,18426078-18426343,18427659-18427749
Length = 215
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 415 YIVHYTTTISNYIYTRLFCNYLNIYLN 495
+ VH+ T IS ++ T L+ ++ YLN
Sbjct: 177 HYVHWITWISGFVQTLLYADFFYYYLN 203
>02_01_0252 -
1657268-1657692,1657727-1658445,1658761-1659089,
1659223-1659375,1659430-1659561,1659748-1659852,
1660020-1660193,1660283-1660352,1660458-1660639,
1660738-1660847,1660948-1661052,1661153-1661231,
1662128-1662168,1662283-1662358,1662455-1662589
Length = 944
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 200 FAVVMLWIMFLVKVGPHW--SKYFITRQSVLTNGFFGALFTYVLFWTFIYGM 349
F V W FL VGP + F+ ++ T+ GA F Y L W + GM
Sbjct: 42 FRVQPRWRKFLAHVGPGALVAIGFLDPSNLETDMQAGADFKYELLWVILVGM 93
>01_05_0687 + 24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 88 QKQCGGCRILSYFYGCIVRIHCRC 159
Q CG CRIL ++ +HC C
Sbjct: 1370 QMVCGSCRILLAYFRGAGYVHCTC 1393
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,602,547
Number of Sequences: 37544
Number of extensions: 285927
Number of successful extensions: 786
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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