Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E04
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21477| Best HMM Match : 7tm_1 (HMM E-Value=2.7e-06)                 32   0.45 
SB_42099| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_40363| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      28   5.5  
SB_40960| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_14107| Best HMM Match : Herpes_UL3 (HMM E-Value=4.8)                28   7.2  
SB_53863| Best HMM Match : Keratin_B2 (HMM E-Value=0.67)               27   9.6  
SB_48544| Best HMM Match : TSP_1 (HMM E-Value=3.1e-32)                 27   9.6  
SB_29494| Best HMM Match : Mpp10 (HMM E-Value=0.62)                    27   9.6  

>SB_21477| Best HMM Match : 7tm_1 (HMM E-Value=2.7e-06)
          Length = 348

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 194 YVFAVVML--WIMFLVKVGPHWSKYFITRQSVLTNGFFGALFTYVLFWTFI 340
           Y F V++   W  F+    PH  K F+T++ VL   F  A+F Y++ +T +
Sbjct: 114 YSFLVILALSWTQFVAITWPHSYKRFVTKRKVLF--FMVAVFLYLVLFTSV 162


>SB_42099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +2

Query: 23  MSAVTKFKENKP----EPVAYSEAALRNNAVVVEYCRTSMAALSGSTAGVLGLTGLNGFA 190
           ++AV    EN P    + V Y+E ++ + +  V+YC  S+  +S +   V  L G +GF 
Sbjct: 104 ITAVYSNTENSPPLSRDHVMYTETSVPDGSTCVQYCELSLECVSINYNPVAMLGGFDGFD 163

Query: 191 FYV 199
            ++
Sbjct: 164 GFI 166


>SB_40363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 217 EHYNCKHVECKAIEPSETKNTCSGS*QCSHRSTTVFDN 104
           E+  CK  +C++ +P E K  C    +C H     F N
Sbjct: 9   ENIKCKEKDCESKKPEEAKALCDAEEKC-HAFVLTFSN 45


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = +1

Query: 61  ACGLQ*SSSQKQCGGCRILSYFYG---CIVRIHCRCSWSHWAQWLCILRVCSCNAL 219
           +C +   S +  C  CR++ Y      C  R+H +CS        C +  CSC  +
Sbjct: 236 SCRVVCYSCRVACCSCRVVCYSCRVACCSCRVHMKCSSCRVVCSSCRVACCSCRVV 291


>SB_40960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 192 NAKPLSPVRPRTPAVDPDNAAIEVRQY 112
           N+ PL P RPR    DPD    E R+Y
Sbjct: 69  NSYPLIPRRPRRLGKDPDCPCSESREY 95


>SB_14107| Best HMM Match : Herpes_UL3 (HMM E-Value=4.8)
          Length = 314

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -3

Query: 243 PTLTKNIIQSITTANT*NAKPLSPVRPRTPAVDPDNAAIEVRQYSTTTALF 91
           P    N++  +  A+T N KP++  R    AVD +NA + V   S +T  +
Sbjct: 144 PQFPPNVLNYVY-ASTSNRKPVTANRGLPFAVDSENAMLNVYAISNSTVFY 193


>SB_53863| Best HMM Match : Keratin_B2 (HMM E-Value=0.67)
          Length = 441

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 112 ILSYFYGCIVRIHCRCSWSHWAQWLCILRVC 204
           ++ Y   CI  ++  C+++H A+ +C+  VC
Sbjct: 269 VVVYCRTCIRLVYVSCAYAHAAREVCVREVC 299


>SB_48544| Best HMM Match : TSP_1 (HMM E-Value=3.1e-32)
          Length = 326

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +1

Query: 31  CDEIQRKQARACGLQ*SSSQKQCGG--CR-ILSYFYGCIVRIHCRCSWSHWAQW 183
           C    R + R+C    S+ + Q GG  C+  L  +  C ++ HC  +W  W+ W
Sbjct: 157 CGAGHRLRRRSC----SNPKPQYGGSECKGSLEKWGKCQLQEHCPGNWGEWSSW 206


>SB_29494| Best HMM Match : Mpp10 (HMM E-Value=0.62)
          Length = 631

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +2

Query: 44  KENKPEPVAYSEAALRNNAVVVEYCRTSMAALSGSTAGVLG 166
           K +KP+PV+ +++ L   A +V+  + + A  +G  + +LG
Sbjct: 491 KISKPKPVSETDSILDKKADIVKNVKKASATQNGKQSKILG 531


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,605,154
Number of Sequences: 59808
Number of extensions: 360898
Number of successful extensions: 1023
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)