Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E04
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49540.1 68418.m06131 expressed protein contains Pfam profile...    75   4e-14
At1g61380.1 68414.m06917 S-locus protein kinase, putative simila...    29   3.4  
At1g60550.1 68414.m06816 naphthoate synthase, putative / dihydro...    28   5.9  
At1g30240.1 68414.m03699 PELP1-related contains weak similarity ...    28   5.9  
At5g03570.1 68418.m00315 iron-responsive transporter-related sim...    27   7.8  
At3g46700.1 68416.m05070 UDP-glucoronosyl/UDP-glucosyl transfera...    27   7.8  

>At5g49540.1 68418.m06131 expressed protein contains Pfam profile
           PF05646: Protein of unknown function (DUF786)
          Length = 114

 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 36/108 (33%), Positives = 60/108 (55%)
 Frame = +2

Query: 26  SAVTKFKENKPEPVAYSEAALRNNAVVVEYCRTSMAALSGSTAGVLGLTGLNGFAFYVFA 205
           S+  + K+   +   +S   L+NN  V++  RT ++ ++G  AG++G  GL GF FY   
Sbjct: 3   SSEKRSKDIMSDIPTFSAENLQNNLKVIQNSRTFLSIIAGVLAGIIGFNGLIGFVFYFVV 62

Query: 206 VVMLWIMFLVKVGPHWSKYFITRQSVLTNGFFGALFTYVLFWTFIYGM 349
           +++  +  + K G     YF +   VL +GF G L ++VLFWTF Y +
Sbjct: 63  MLITSVGLMAKAGFSADLYFDSWNRVLFDGFLGGLMSFVLFWTFAYDL 110


>At1g61380.1 68414.m06917 S-locus protein kinase, putative similar
           to KI domain interacting kinase 1 [Zea mays]
           gi|2735017|gb|AAB93834; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 805

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +2

Query: 113 YCRTSMAALSGSTAG--VLGLT-GLNGFAFYVFAVVMLWIMFLVKVGPHWSKYFITRQSV 283
           + R + + L+GS+    ++G T  L+ F   VFA +MLW  +  K    W   F  RQ V
Sbjct: 413 FIRLASSELAGSSRRKIIVGTTVSLSIFLILVFAAIMLW-RYRAKQNDAWKNGF-ERQDV 470

Query: 284 LTNGFF 301
               FF
Sbjct: 471 SGVNFF 476


>At1g60550.1 68414.m06816 naphthoate synthase, putative /
           dihydroxynaphthoic acid synthetase, putative / DHNA
           synthetase, putative contains similarity to MENB from
           Escherichia coli [SP|P27290], Bacillus subtilis
           [SP|P23966]; contains Pfam profile PF00378 enoyl-CoA
           hydratase/isomerase family protein
          Length = 337

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +2

Query: 23  MSAVTKFKENKPEPVAYSEAALRNNAVVVEYCRTSMAALSGSTAGVLGLTGLNGFAFY 196
           ++ V   ++ + E V +    LRN+   +   + ++ A+    AG+ GL G     FY
Sbjct: 253 INTVVPLEDLEKETVKWCREILRNSPTAIRVLKAALNAVDDGHAGLQGLGGDATLLFY 310


>At1g30240.1 68414.m03699 PELP1-related contains weak similarity to
           PELP1 [Homo sapiens] gi|21426922|gb|AAC17708
          Length = 873

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
 Frame = +1

Query: 181 WLCILRVCSCNALDNVLSQSW-TTLEQVFYNQTECS-DKWILWSIIYICTILDVHLWDGS 354
           +L + +V S  +   +LS+S   +++Q  + +++ + D W+      I + +    W G 
Sbjct: 38  FLSLSKVVSTISTHKLLSESPPASIDQKLHAKSKSAVDDWVARLSALISSDMPDKSWVGI 97

Query: 355 CLLGYTS*SCYSIRGNRNIRYIVHYTTTISN 447
           CL+G T   C S R  ++  Y V + + +S+
Sbjct: 98  CLIGVTCQECSSDRFFKS--YSVWFNSLLSH 126


>At5g03570.1 68418.m00315 iron-responsive transporter-related
           similar to iron-regulated transporter IREG1 [Mus
           musculus] GI:7264727
          Length = 512

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 163 WSHWAQWLCILRVC 204
           WS W+QW C+L VC
Sbjct: 378 WSFWSQWTCLL-VC 390


>At3g46700.1 68416.m05070 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 385

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 129 WLHCQDPLQVFLVSLGSMALHST 197
           WL+ Q P  V  +SLGSM L  T
Sbjct: 191 WLNKQKPRSVIYISLGSMVLMET 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,180,426
Number of Sequences: 28952
Number of extensions: 240892
Number of successful extensions: 708
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)