Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_E03
(457 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 24 0.77
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 24 0.77
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 24 0.77
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 24 0.77
AY490815-1|AAR82970.1| 136|Tribolium castaneum glass protein pr... 22 3.1
AY293621-1|AAP46162.1| 392|Tribolium castaneum glass protein pr... 22 3.1
AF236856-1|AAG17563.2| 370|Tribolium castaneum Kruppel protein ... 21 5.5
EU019713-1|ABU25225.1| 528|Tribolium castaneum chitin deacetyla... 20 9.5
EU019712-1|ABU25224.1| 535|Tribolium castaneum chitin deacetyla... 20 9.5
DQ493452-1|ABF48588.1| 305|Tribolium castaneum hedgehog protein. 20 9.5
DQ414246-1|ABD63008.1| 126|Tribolium castaneum odd-skipped prot... 20 9.5
AM295014-1|CAL25729.1| 407|Tribolium castaneum ultraspiracle nu... 20 9.5
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 23.8 bits (49), Expect = 0.77
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 136 VPSCLHRPSCRCIYFTXLRTLHIPPTHLLAIL 231
+ +CLH CI + L IP +LL IL
Sbjct: 1017 IAACLHPQEFWCIVPGIIYLLSIPSMYLLLIL 1048
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 23.8 bits (49), Expect = 0.77
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 136 VPSCLHRPSCRCIYFTXLRTLHIPPTHLLAIL 231
+ +CLH CI + L IP +LL IL
Sbjct: 1017 IAACLHPQEFWCIVPGIIYLLSIPSMYLLLIL 1048
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
protein.
Length = 1558
Score = 23.8 bits (49), Expect = 0.77
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 136 VPSCLHRPSCRCIYFTXLRTLHIPPTHLLAIL 231
+ +CLH CI + L IP +LL IL
Sbjct: 1017 IAACLHPQEFWCIVPGIIYLLSIPSMYLLLIL 1048
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
protein.
Length = 1558
Score = 23.8 bits (49), Expect = 0.77
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 136 VPSCLHRPSCRCIYFTXLRTLHIPPTHLLAIL 231
+ +CLH CI + L IP +LL IL
Sbjct: 1017 IAACLHPQEFWCIVPGIIYLLSIPSMYLLLIL 1048
>AY490815-1|AAR82970.1| 136|Tribolium castaneum glass protein
protein.
Length = 136
Score = 21.8 bits (44), Expect = 3.1
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 49 VRVHFNQHVQISAVRCYSCVCCRKAF 126
V H H S R Y C C+KAF
Sbjct: 65 VTTHMRTH---SGERPYRCRLCKKAF 87
>AY293621-1|AAP46162.1| 392|Tribolium castaneum glass protein
protein.
Length = 392
Score = 21.8 bits (44), Expect = 3.1
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 49 VRVHFNQHVQISAVRCYSCVCCRKAF 126
V H H S R Y C C+KAF
Sbjct: 321 VTTHMRTH---SGERPYRCRLCKKAF 343
>AF236856-1|AAG17563.2| 370|Tribolium castaneum Kruppel protein
protein.
Length = 370
Score = 21.0 bits (42), Expect = 5.5
Identities = 6/8 (75%), Positives = 8/8 (100%)
Frame = -1
Query: 25 PMHNHRPA 2
P+H+HRPA
Sbjct: 302 PLHDHRPA 309
>EU019713-1|ABU25225.1| 528|Tribolium castaneum chitin deacetylase
2B protein.
Length = 528
Score = 20.2 bits (40), Expect = 9.5
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 215 TSWLFCLHLLG 247
T WL CL LLG
Sbjct: 5 TYWLCCLLLLG 15
>EU019712-1|ABU25224.1| 535|Tribolium castaneum chitin deacetylase
2A protein.
Length = 535
Score = 20.2 bits (40), Expect = 9.5
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +2
Query: 215 TSWLFCLHLLG 247
T WL CL LLG
Sbjct: 5 TYWLCCLLLLG 15
>DQ493452-1|ABF48588.1| 305|Tribolium castaneum hedgehog protein.
Length = 305
Score = 20.2 bits (40), Expect = 9.5
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1
Query: 190 RTLHIPPTHLLAI 228
RTL + P+HLL +
Sbjct: 174 RTLTVTPSHLLVL 186
>DQ414246-1|ABD63008.1| 126|Tribolium castaneum odd-skipped
protein.
Length = 126
Score = 20.2 bits (40), Expect = 9.5
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1
Query: 91 RCYSCVCCRKAF 126
R YSC C KAF
Sbjct: 106 RPYSCDICGKAF 117
>AM295014-1|CAL25729.1| 407|Tribolium castaneum ultraspiracle
nuclear receptor protein.
Length = 407
Score = 20.2 bits (40), Expect = 9.5
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -3
Query: 242 VGVGRIAKR*VGGICRVRXQVKYMQRQLGRCRQLGTHTP 126
VGVG I R + + ++K + +LG R + + P
Sbjct: 286 VGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNP 324
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,397
Number of Sequences: 336
Number of extensions: 1189
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10406187
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
- SilkBase 1999-2023 -