Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E03
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_39926| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_18537| Best HMM Match : YscO (HMM E-Value=1.6)                      27   9.7  
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.7  

>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 209 LLTSWLFCLHLLGPIHLLRSLIDNQKAILNAIEFRLCDTLTNYIQL 346
           LL  W +C       +LL +L DN+  + + +  + C  L   +QL
Sbjct: 256 LLMGWRYCYSCENAQNLLDALWDNEAPVSHPVFHQACQKLAYQVQL 301


>SB_39926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 49

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 306 SIAFKIAFWLSISERSKCMG 247
           ++A   AFWLS++ R KC G
Sbjct: 25  NVAIVTAFWLSVTGREKCGG 44


>SB_18537| Best HMM Match : YscO (HMM E-Value=1.6)
          Length = 213

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -3

Query: 314 IEIQSHSK*PFGCQSANEVSVWGRVGVGRIAKR*VGGICRVRXQVKYMQRQLGRCRQL 141
           I   SH       ++ N +S   R  VG +     G +CR+  QV+  +R+  R R+L
Sbjct: 22  ISEDSHYLTSRSARNMNALSEAFRDHVGAVGDFMTGRLCRIAGQVEEAERESTRLREL 79


>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 323  YHIIEIQSHSK*PFGCQSANEVSVWGRVG 237
            Y +  +Q+H++   G ++ N  S WGR G
Sbjct: 3237 YKVFSMQAHNECRSGPKAHNSYSAWGRKG 3265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,168,727
Number of Sequences: 59808
Number of extensions: 154824
Number of successful extensions: 2240
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2240
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)