Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E03
         (457 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81533-8|CAB04332.1|  917|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    27   6.5  

>Z81533-8|CAB04332.1|  917|Caenorhabditis elegans Hypothetical
           protein F36G9.13 protein.
          Length = 917

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 169 CIYFTXLRTLHIPPTHLL--AILPTPTRPHTLTSFAD*QPKGYF 294
           CIY   LR  +  PT+ +  A  P P  P    S +D +P+G+F
Sbjct: 776 CIYHK-LRRRYAKPTYNMQTAREPEPNTPKPAASHSDPEPRGFF 818


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 327 SVSHNRNSIAFKIAFWLSISERSKCMGPSRCRQNSQEVS 211
           SVS + N +      +  +S  S+C+G  +C  NSQ +S
Sbjct: 381 SVSCSTNQVCISNQCYNYVSIGSQCVGSQQCLSNSQCIS 419


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,717,959
Number of Sequences: 27780
Number of extensions: 113137
Number of successful extensions: 336
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)