Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E03
         (457 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   2.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   2.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   4.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   4.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   6.3  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +2

Query: 191 VLCIFRLLTSWLFCLHLLGPIHLLRSLIDNQKAILNAIE 307
           ++C+  L+  W  CL  L P  +L+    N    +N ++
Sbjct: 282 LICMMLLIGHWSGCLQFLVP--MLQGFPSNSWVAINELQ 318


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +2

Query: 191 VLCIFRLLTSWLFCLHLLGPIHLLRSLIDNQKAILNAIE 307
           ++C+  L+  W  CL  L P  +L+    N    +N ++
Sbjct: 250 LICMMLLIGHWSGCLQFLVP--MLQGFPSNSWVAINELQ 286


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 179 KYMQRQLGRCRQLGTHTPK 123
           +Y Q    RC+ +G H P+
Sbjct: 342 RYRQELQKRCKWMGIHEPE 360


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 179 KYMQRQLGRCRQLGTHTPK 123
           +Y Q    RC+ +G H P+
Sbjct: 342 RYRQELQKRCKWMGIHEPE 360


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 91  RCYSCVCCRKAF 126
           + Y C+ C+KAF
Sbjct: 60  KTYQCLLCQKAF 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,200
Number of Sequences: 438
Number of extensions: 1384
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)