Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E02
         (434 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7SGA1 Cluster: Putative uncharacterized protein NCU027...    36   0.49 
UniRef50_A4BQN8 Cluster: DNA polymerase III subunit delta; n=3; ...    33   2.6  
UniRef50_Q9ZUN0 Cluster: Putative F-box protein At2g19630; n=1; ...    32   6.0  
UniRef50_A7NDC7 Cluster: Major facilitator superfamily; n=10; Fr...    31   8.0  

>UniRef50_Q7SGA1 Cluster: Putative uncharacterized protein
           NCU02749.1; n=1; Neurospora crassa|Rep: Putative
           uncharacterized protein NCU02749.1 - Neurospora crassa
          Length = 526

 Score = 35.5 bits (78), Expect = 0.49
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +2

Query: 152 PATPFPTCHPYLYLPSTALHSPASTHKSHMQMIISFVNKMLK*IHTSGTSSVTINKIYCC 331
           P  PFP   P+L  PS +   P STH        ++VN  L   +T+G  +V  +K + C
Sbjct: 158 PPRPFPP--PFLSPPSGSFSDPLSTHDRSRDRRAAYVNGKLIRGYTNGDDAVFASKYFVC 215


>UniRef50_A4BQN8 Cluster: DNA polymerase III subunit delta; n=3;
           Ectothiorhodospiraceae|Rep: DNA polymerase III subunit
           delta - Nitrococcus mobilis Nb-231
          Length = 340

 Score = 33.1 bits (72), Expect = 2.6
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 78  DRNAGSLRLRGGRPVCG-ASAVRCNCRLPPFLRVILICTYRL 200
           +R    LRL GG+P  G A A++  CR PP   ++L+ + RL
Sbjct: 77  ERRLIELRLPGGKPGAGGAQALQAYCRAPPADTLLLVASARL 118


>UniRef50_Q9ZUN0 Cluster: Putative F-box protein At2g19630; n=1;
           Arabidopsis thaliana|Rep: Putative F-box protein
           At2g19630 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 297

 Score = 31.9 bits (69), Expect = 6.0
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
 Frame = +2

Query: 38  LASDKLSKCLRRF*SQCWLSSPARRPTRMWCLCRTLQLPATPFP--TCHPYLYLPSTALH 211
           L+ + +++C  R  S+ W S+ +R       L R+L  P   F       YL+L S  L 
Sbjct: 29  LSVNSIARC--RCVSKQWASTLSRPYFTELFLTRSLARPKLLFAYRKGSDYLFLSSPQLQ 86

Query: 212 SPASTHKSHMQMIISFVNKMLK*IHTSGTSSVTINKIYCC 331
           +P   HK    ++   VN  +  I T G+ +++   I CC
Sbjct: 87  NPDDDHKKSSPVV---VNYHMHHILTLGSGNMSWRTIQCC 123


>UniRef50_A7NDC7 Cluster: Major facilitator superfamily; n=10;
           Francisella tularensis|Rep: Major facilitator
           superfamily - Francisella tularensis subsp. holarctica
           FTA
          Length = 418

 Score = 31.5 bits (68), Expect = 8.0
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 121 YVVPLPYAATAGYPLSYVS--SLSVPTVYSSAFTGFYPQIAYANDYIFRK*NVKVNTYIW 294
           Y + L Y +     L Y    SL+V TV+S  F+   P     +DY+ RK  +K + +I+
Sbjct: 248 YYLVLSYLSNHFVELHYSEFFSLAVVTVFSLIFSFSAPLWGLLSDYLGRKPLIKFSIWIY 307

Query: 295 NFFCY 309
             F Y
Sbjct: 308 LIFAY 312


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 331,718,597
Number of Sequences: 1657284
Number of extensions: 6323571
Number of successful extensions: 16712
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16700
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 21496989549
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)