Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_E02
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   3.8  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    25   5.0  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   5.0  
SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||...    25   6.7  

>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 100

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 128 CLCRTLQLPATPFPTCHPYLYLP 196
           C  R +Q    PFP  H Y ++P
Sbjct: 11  CSHRVIQAKHPPFPLFHSYFHIP 33


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 2   GRPMSANRVQSNLASDKLSKCL 67
           G+P+S + V++NL  DKL K +
Sbjct: 519 GKPLSPSLVEANLNPDKLIKTI 540


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +2

Query: 146 QLPATPFPTCHPYLYLPSTALHSPASTHKSHMQMIIS 256
           Q P +P P+  P +  PSTA       H S     +S
Sbjct: 97  QSPTSPHPSNQPAMLSPSTAASQHHHHHSSSSSYAVS 133


>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +2

Query: 170 TCHPYLYLPSTALHSPASTHKSHMQMIISFVNKMLK*IHTSGTSSVTINK 319
           T   Y+Y     +H         M+++ SFVN + + I T  +     NK
Sbjct: 36  TYSSYIYKVLKQVHPDTGISNQAMRILNSFVNDIFERIATEASKLAAYNK 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,390,132
Number of Sequences: 5004
Number of extensions: 26864
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)