Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_E02
(434 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0282 - 2088302-2089081 28 2.9
01_01_0779 - 6030245-6031780 28 2.9
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927 27 5.0
07_01_0140 + 1022878-1023057,1024461-1024579,1024952-1025237 27 5.0
02_02_0123 + 7015905-7015928,7015975-7016105,7017675-7017940,701... 27 5.0
11_01_0273 - 2048527-2049297 27 8.7
02_01_0317 - 2128660-2128776,2129281-2129364,2129463-2129543,213... 27 8.7
01_05_0264 + 20168409-20168593,20168726-20169055,20170142-201706... 27 8.7
01_01_0782 - 6056440-6057954 27 8.7
>12_01_0282 - 2088302-2089081
Length = 259
Score = 28.3 bits (60), Expect = 2.9
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 95 SSPARRPTRMWCLCRTLQLPATPFPTCHPYLYL--PSTALHSPAST 226
SS RPT + CLC LPATP PT + L P +P ST
Sbjct: 26 SSGCGRPTTV-CLCP--YLPATPLPTSTTVVILHHPHALRRNPLST 68
>01_01_0779 - 6030245-6031780
Length = 511
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +1
Query: 118 PYVVPLPYAATAGYPLSYVSSLSVPTVYSSAFTGFYPQIAYANDYIFRK*NVKVNTYIWN 297
P++ + TA Y + ++ P+VY S+F GF A+ D F + + Y N
Sbjct: 389 PHIAVEAFQLTAQYTIPK-GTMVFPSVYESSFQGFQDADAFDPDRFFSEARREDVVYKRN 447
Query: 298 FFCY 309
F +
Sbjct: 448 FLAF 451
>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
Length = 229
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 162 GVAGSCSVRQRHHIRVGRRAGEESQHCDQKR 70
G A +C R+RHH R+ R +HC+++R
Sbjct: 85 GSARNCR-RRRHHPRIRLRPPPTRRHCERER 114
>07_01_0140 + 1022878-1023057,1024461-1024579,1024952-1025237
Length = 194
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 155 ATPFPTCHPYLYLPSTALHSPASTHKSHMQMI 250
A P P+ HP L +TA SPA+ + ++ I
Sbjct: 25 APPLPSLHPAAQLMTTAFSSPAAAAAARVRRI 56
>02_02_0123 +
7015905-7015928,7015975-7016105,7017675-7017940,
7018239-7018327,7018716-7018811,7018874-7018969,
7019121-7019251,7020123-7020177,7020645-7020800,
7021238-7021306,7021392-7021499,7022128-7022196,
7022743-7022797,7023031-7023227
Length = 513
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +3
Query: 81 RNAGSLRLRGGRPVCG-ASAVRCNCRLPPFLRVILICTYRLQLCIHRLLPTNR 236
R A + + GR + G A + + + PP LR I+ C Y C+ R T+R
Sbjct: 70 RRALTHNIASGRTLFGRAFSQKTHPHRPPLLRRIIFCRYLPSRCLLRSSRTSR 122
>11_01_0273 - 2048527-2049297
Length = 256
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +2
Query: 95 SSPARRPTRMWCLCRTLQLPATPFPTCHPYLYL--PSTALHSPAST 226
SS RP+ + CLC LPATP PT + L P +P ST
Sbjct: 26 SSGCGRPSTV-CLCP--YLPATPLPTSTTVVVLHHPHALRRNPLST 68
>02_01_0317 -
2128660-2128776,2129281-2129364,2129463-2129543,
2130230-2130407,2130530-2130673,2130780-2130826,
2131149-2131205,2131989-2132087,2132301-2132423,
2132514-2132636,2132859-2132972,2133612-2133800,
2134408-2134574,2134707-2134791,2134891-2135085,
2135162-2135251,2135418-2135603,2135885-2135959,
2136757-2136957
Length = 784
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 113 PTRMWCLCRTLQLP 154
P RMWC CR + LP
Sbjct: 277 PGRMWCHCRMVYLP 290
>01_05_0264 +
20168409-20168593,20168726-20169055,20170142-20170670,
20170825-20170958,20171080-20171252,20171274-20171840,
20172487-20172716,20172954-20172995,20173096-20173224
Length = 772
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 173 CHPYLYLPSTALHSPASTHKSHMQM 247
C PYL + STAL++ A++ H M
Sbjct: 438 CRPYLSIDSTALNASATSINGHNWM 462
>01_01_0782 - 6056440-6057954
Length = 504
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = +1
Query: 118 PYVVPLPYAATAGYPLSYVSSLSVPTVYSSAFTGFYPQIAYANDYIFRK*NVKVNTYIWN 297
P++ + T Y + +L +P++Y S+F GF+ A+ + F + + Y N
Sbjct: 382 PHIALQNFQLTESYTIPK-GTLVLPSMYESSFQGFHDPDAFDPERFFSEARREDVVYKRN 440
Query: 298 FFCY 309
F +
Sbjct: 441 FLAF 444
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,030,340
Number of Sequences: 37544
Number of extensions: 181657
Number of successful extensions: 573
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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