Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_E02
(434 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57) 29 2.2
SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11) 28 2.9
SB_28593| Best HMM Match : CUB (HMM E-Value=1.3e-14) 28 2.9
SB_10069| Best HMM Match : VWC (HMM E-Value=2.4) 28 3.8
SB_37027| Best HMM Match : VWC (HMM E-Value=2.4) 28 3.8
SB_41930| Best HMM Match : Pkinase_Tyr (HMM E-Value=9.4e-10) 27 5.0
SB_11785| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-28) 27 5.0
SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027) 27 8.8
>SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +2
Query: 143 LQLPATPFPT----CHPYLYLPSTALHSPASTHKSHMQMIISFVNKMLK*IHTSGTSSVT 310
L P+TP PT H Y L LH+P++ +H + ++ + +HT T + T
Sbjct: 52 LHTPSTPTPTHAENTHAYTRLVHPRLHTPSTPTATHAEYTHAYKRRAHPRLHTPTTHTPT 111
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = +2
Query: 143 LQLPATPFPT----CHPYLYLPSTALHSPASTHKSHMQMIISFVNKMLK*IHTSGTSSVT 310
L P+TP T H Y T LH+P++ +H + ++ + +HT T + T
Sbjct: 27 LHTPSTPTATHAEYTHAYTRRVHTRLHTPSTPTPTHAENTHAYTRLVHPRLHTPSTPTAT 86
>SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +2
Query: 143 LQLPATPFPT----CHPYLYLPSTALHSPASTHKSHMQMIISFVNKMLK*IHTSGTSSVT 310
L P+TP PT H Y L LH+P++ +H + ++ + +HT T + T
Sbjct: 52 LHTPSTPTPTHAENTHAYTRLVHPRLHTPSTPTATHAEYTHAYKRRAHPRLHTPTTHTPT 111
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Frame = +2
Query: 143 LQLPATPFPT----CHPYLYLPSTALHSPASTHKSHMQMIISFVNKMLK*IHTSGTSSVT 310
L P+TP T H Y T LH+P++ +H + ++ + +HT T + T
Sbjct: 27 LHTPSTPTATHAEYTHAYTRRVHTRLHTPSTPTPTHAENTHAYTRLVHPRLHTPSTPTAT 86
>SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)
Length = 1121
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 162 GVAGSCSVRQRHHIRVGRRAGEESQHCDQKRLK 64
G G VRQR+ +R G + QHCD+ RLK
Sbjct: 127 GDRGGVGVRQRYPVRGGGK-----QHCDEARLK 154
>SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)
Length = 1171
Score = 28.3 bits (60), Expect = 2.9
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +1
Query: 172 VSSLSVPTVYSSAFTGFYPQI--AYANDYIFRK*NVKVNTYIWN--FFCYD 312
+ S+S+P S GF PQ+ +Y +I R+ N+ T I+N +F YD
Sbjct: 608 IPSVSMPVQSSQVVLGFLPQVTDSYLTRHIDRELNLS-KTAIYNSVYFAYD 657
>SB_28593| Best HMM Match : CUB (HMM E-Value=1.3e-14)
Length = 327
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 139 YAATAGYPLSYVSSLSVPTVYSSAFTGFYPQ 231
Y A GYP+ + P Y A G YPQ
Sbjct: 295 YPAQGGYPMQPQGQMPPPPSYGQATAGQYPQ 325
>SB_10069| Best HMM Match : VWC (HMM E-Value=2.4)
Length = 289
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = +3
Query: 120 VCGASAVRCNCRLPPFLRVILICTYR-----LQLCIHRLLPTNRIC 242
+C +CR P ++R++ C L C LLP+ RIC
Sbjct: 147 ICSIIVRVLHCRAPEYVRLLYECCTAEHPNMLDYCTSTLLPSTRIC 192
>SB_37027| Best HMM Match : VWC (HMM E-Value=2.4)
Length = 289
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = +3
Query: 120 VCGASAVRCNCRLPPFLRVILICTYR-----LQLCIHRLLPTNRIC 242
+C +CR P ++R++ C L C LLP+ RIC
Sbjct: 147 ICSIIVRVLHCRAPEYVRLLYECCTAEHPNMLDYCTSTLLPSTRIC 192
>SB_41930| Best HMM Match : Pkinase_Tyr (HMM E-Value=9.4e-10)
Length = 597
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 26 VQSNLASDKLSKCLRRF*SQCWLSSPARRPT 118
++ L +D + +F QCW P+ RPT
Sbjct: 528 LRPTLNADDCDPTITKFIKQCWSEEPSARPT 558
>SB_11785| Best HMM Match : F5_F8_type_C (HMM E-Value=2.1e-28)
Length = 297
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +2
Query: 143 LQLPATPFPTCHPYLYLPSTALHSPASTHKSHMQMIISFVNKMLK*IHTSGTSSVTINKI 322
+++P P P H Y + S + + H+Q + +++++ + T VT+N++
Sbjct: 78 VRVPGKPRPKWHSDKYAETPDARSLSQGCRPHLQHLYFSEDRVVRLLFTLSDRLVTVNRV 137
Query: 323 YCC 331
C
Sbjct: 138 VGC 140
>SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2011
Score = 27.5 bits (58), Expect = 5.0
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -2
Query: 328 TVNFIYRNRRSSRCMYLL*HFIYERYNHLHMRFVGRSR*MQSCRR*VQIRMTRRKGGSRQ 149
T + RR+ + YL+ +Y + NH++ + SC VQI R +
Sbjct: 44 TTKISHTYRRTGK--YLVRLMVYNKINHVNASMTVFVSRLSSCNLQVQISGERELQATDS 101
Query: 148 LQRTAEAPHT 119
L R E P T
Sbjct: 102 LTRGTERPRT 111
>SB_7281| Best HMM Match : TSP_1 (HMM E-Value=0.027)
Length = 406
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +1
Query: 118 PYVVPLPY---AATAGYPLSYVSSLSVPTVYSSAFTG 219
PY P P AA A YP +YVSS + T +S+F G
Sbjct: 104 PYPAPYPATYSAAPAAYPAAYVSSAT--TYDTSSFGG 138
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,624,878
Number of Sequences: 59808
Number of extensions: 213323
Number of successful extensions: 553
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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