Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D23
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07741.1 68415.m00991 ATPase subunit 6, putative similar to A...    38   0.004
At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger) fa...    28   6.2  

>At2g07741.1 68415.m00991 ATPase subunit 6, putative similar to
           ATPase subunit 6 GI:515963 from [Raphanus sativus];
           contains Pfam profile: PF00119 ATP synthase, A subunit
          Length = 385

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 22/72 (30%), Positives = 30/72 (41%)
 Frame = +1

Query: 439 PYIFTRTRHXXXXXXXXXXXXXXXXXYG*IKNTNHIFIHIIPQGTPYILIPFIVIXETIR 618
           PY FT T H                  G  ++  H F  ++P G P  L PF+V+ E I 
Sbjct: 241 PYSFTVTSHFLITLALSFSIFIGITIVGFQRHGLHFFSFLLPAGVPLPLAPFLVLLELIS 300

Query: 619 NIIRPGTLAVRL 654
              R  +L +RL
Sbjct: 301 YCFRALSLGIRL 312


>At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 finger protein RHX1a
           [Arabidopsis thaliana] GI:3790591; contains Pfam profile
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 423

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 172 ITNLFSILDPSTNLINLPINXIRTILGLLFIPYRFXLIPNR 294
           ++NL S + P+  LI + ++ I  I GLL I  +F L P+R
Sbjct: 32  LSNLNSKITPNILLIIIILSIIFFISGLLHILVKFLLTPSR 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,970,892
Number of Sequences: 28952
Number of extensions: 107313
Number of successful extensions: 207
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)