Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_D21
(370 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 28 0.40
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch... 28 0.53
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 26 2.1
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 25 2.8
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 25 3.7
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 4.9
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 4.9
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 24 6.5
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 24 6.5
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 24 6.5
>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 28.3 bits (60), Expect = 0.40
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 342 VSRDIRTTTEARRPGTARNTRRPK 271
V+R +RT+T RRP T R+PK
Sbjct: 21 VARKVRTSTTFRRPKTLELARKPK 44
>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 27.9 bits (59), Expect = 0.53
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -2
Query: 342 VSRDIRTTTEARRPGTARNTRRPK 271
V++ +RT+T RRP T + +R+PK
Sbjct: 21 VAKKVRTSTTFRRPKTLQLSRKPK 44
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 2.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 350 AEP*AGTSGPPQRPGAQAQRETLGVRSRQS*ALAAGSAQR 231
A+P +G + PGA+ Q T R + +++GSA +
Sbjct: 440 AKPSVKPAGAYRPPGARGQNSTFSYRREEIDVMSSGSANK 479
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.4 bits (53), Expect = 2.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 328 QDHHRGPAPRHSEKHSASEADRAERLLPGALRD 230
++HH+GP +H+E+ + E L+ A D
Sbjct: 416 KEHHQGPKEKHNERPEQNMQSSHELLVIEAFAD 448
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.0 bits (52), Expect = 3.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 315 EARRPGTARNTRRPKPTELSACCRERSETPRHRN 214
EA PG RNTR+ ++S ++ET +N
Sbjct: 475 EADYPGVNRNTRQDDVQDISMETESQNETDESQN 508
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 24.6 bits (51), Expect = 4.9
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -2
Query: 240 RSETPRHRNKPSRPVWSRRSPHH 172
R + R N P P W+ R+ HH
Sbjct: 885 REQYERSLNLPMGPEWTTRASHH 907
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 24.6 bits (51), Expect = 4.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 306 RPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRS 181
RP + + TE+SA SE R++ K SR +SR S
Sbjct: 174 RPANSTSVPNAVNTEISAARATESEASRNQTKASRD-YSRAS 214
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 24.2 bits (50), Expect = 6.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 1 IDTCYDFVCNAIPLRPNGLRRNFSPKLFSRLN 96
I++ YD + A ++ NF PKLF + N
Sbjct: 316 IESAYDLLLGAPIVKLKSSVSNFQPKLFPKNN 347
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 24.2 bits (50), Expect = 6.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 300 GTARNTRRPKPTELSACCRERSETPRHRNKPSRPV 196
GTA + R P SA + +S TP N + PV
Sbjct: 188 GTALSQRETLPNMGSAQMKSQSRTPSFSNVTTSPV 222
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 24.2 bits (50), Expect = 6.5
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = +1
Query: 181 TPSRPNRSRRFIPVTGRL*ALPAASAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAPPG 360
TPS P S +P + A+P + T S P + G P V A G+ PG
Sbjct: 430 TPSLPVPSIPAVPGMEAM-AMPPGVTSSIAVPTTSSMPLQGMPTMFGAPGVSAPGTEAPG 488
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,535,178
Number of Sequences: 5004
Number of extensions: 27670
Number of successful extensions: 101
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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