Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D20
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    27   1.3  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    27   2.3  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.0  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   7.0  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    25   7.0  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   9.3  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   9.3  

>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 295 NIQDSGTTQTYNTP*HQEW--SAKSLQIISSLSNDTIYFEKWVRPPQEQNVIT 447
           N+ DS TT+   +P + +W  S +S Q  S    +  ++ K  + P + NV+T
Sbjct: 54  NVGDSDTTENIKSPFNGQWPFSRRSSQSSSHPVFEETHWSKHSKRPGKLNVLT 106


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 278 KDFTAEIYRIVAPHKLTIHPNTRSGLRNHFRLYHLYQMILFILR 409
           KD+   + RI   H + +HP+ +S L N   +  L Q IL + R
Sbjct: 429 KDYPTVVSRIRTLHHVKLHPDNKSRLENFSVI--LLQHILHLTR 470


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 519 VFHLYNFSFYYNQRRTNSVLHYLVRD 442
           +F LYN+S Y N   +N    YL+ D
Sbjct: 9   LFQLYNYSVYSNGTISNFTNCYLIND 34


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 178 SATHRCYIMKVITHENLHPN 237
           SAT+  Y +KV+  E LHP+
Sbjct: 802 SATNYLYTIKVVRGEGLHPD 821


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 483 DCNKKKNYINETLIXK 530
           DC  KKNY+N+ L+ K
Sbjct: 265 DCLAKKNYVNKCLMAK 280


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 286 HG*NIQDSGTTQTYNTP*HQEWSAKSLQIISSLSN 390
           HG     +G T       +  W AK LQ++S  S+
Sbjct: 724 HGHKASHNGATTILGIDVNSVWKAKRLQVVSMASS 758


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 497 LFITINEEQIQFCII 453
           +F+T N EQIQ C++
Sbjct: 588 IFVTTNSEQIQNCVL 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,939
Number of Sequences: 5004
Number of extensions: 40586
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)