Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D20
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098996-2|AAC68711.3|  431|Caenorhabditis elegans Hypothetical ...    29   0.11 
Z92803-9|CAC35822.1|  248|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81531-1|CAB04314.2|  436|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>AF098996-2|AAC68711.3|  431|Caenorhabditis elegans Hypothetical
           protein T11F1.6 protein.
          Length = 431

 Score = 29.5 bits (63), Expect(2) = 0.11
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = +1

Query: 220 ENLHPNYCIEGVSFA 264
           +N+H NYC++GVSF+
Sbjct: 323 KNIHANYCLDGVSFS 337



 Score = 22.6 bits (46), Expect(2) = 0.11
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 208 VITHENLHPNYCI 246
           ++  ENLHP++C+
Sbjct: 295 IMNLENLHPDFCL 307


>Z92803-9|CAC35822.1|  248|Caenorhabditis elegans Hypothetical
           protein K01G5.10 protein.
          Length = 248

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 219 MSDDFHDITSMGCRSSLLGILNNSNPEPKIC 127
           + +DFH   + GCR+ L    ++ N EP  C
Sbjct: 208 LKNDFHGAKNFGCRALLFDSSSSHNVEPFYC 238


>Z81531-1|CAB04314.2|  436|Caenorhabditis elegans Hypothetical
           protein F36D3.1 protein.
          Length = 436

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 222 FMSDDFHDITSMGCRSSLLG 163
           F+ DD +DI + GCR  LLG
Sbjct: 102 FVKDDENDIFTSGCRGGLLG 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,441,588
Number of Sequences: 27780
Number of extensions: 226144
Number of successful extensions: 617
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)