Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D20
         (530 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24330.1 68414.m03069 armadillo/beta-catenin repeat family pr...    27   6.0  
At5g40440.1 68418.m04904 mitogen-activated protein kinase kinase...    27   7.9  
At3g24870.1 68416.m03119 expressed protein                             27   7.9  

>At1g24330.1 68414.m03069 armadillo/beta-catenin repeat family
           protein / U-box domain-containing family protein
           contains Pfam domain, PF00514:
           Armadillo/beta-catenin-like repeats and Pfam, PF04564:
           U-box domain
          Length = 771

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +1

Query: 211 ITHENLHPNYCIEGV--SFASQNG 276
           + H +L PNYC++G+  S+  QNG
Sbjct: 323 LPHLSLTPNYCVKGLIASWCEQNG 346


>At5g40440.1 68418.m04904 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK3) similar to NPK2 [Nicotiana
           tabacum] gi|862342|dbj|BAA06731; mitogen-activated
           protein kinase kinase (MAPKK) family, PMID:12119167
          Length = 520

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 210 DFHDITSMGCRSSLLGILNNSNPEPKICELTPHFFGFILVC 88
           +F  I + G  + +L IL++ +P P   E +P F  FI  C
Sbjct: 279 EFPYIANEGPVNLMLQILDDPSPTPPKQEFSPEFCSFIDAC 319


>At3g24870.1 68416.m03119 expressed protein
          Length = 1841

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 14   INFKQLLVFHI*TILQKPKKMKEKGQTKIKPKKWGVNSQI 133
            +NF++LL + +     KPKK K+  Q     + W +N  +
Sbjct: 912  VNFEKLLPYDMAETSGKPKKKKKTHQGSAYDQTWHLNPSV 951


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,624,867
Number of Sequences: 28952
Number of extensions: 203443
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)