Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D19
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    27   1.8  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    27   2.4  
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    26   4.1  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   9.5  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   9.5  

>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 338 TKMKYIMCKTHATLKIQQKKNIKSTRNLGP 249
           TK+K I+ K  + L+++  +N K    LGP
Sbjct: 467 TKLKQIIAKIKSDLEVEANENAKMKAKLGP 496


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 532 HCKLFEYFNDGIVTCSVCTYCLL 600
           HCK F YF+    +C   T C L
Sbjct: 663 HCKAFSYFSQVACSCKSITVCPL 685


>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 338 TKMKYIMCKTHATLKIQQKKNIKSTRNLGPDSPF 237
           T+ + ++CK    +K Q K N+K   +L P  PF
Sbjct: 35  TRGRPLLCKKCRAIKQQLKSNLKCVCHLQPFLPF 68


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = -1

Query: 198 NGNFIP*LLLSH*LINYKSN-----RLAYNKCVRX*NFDCKIXGN 79
           N   IP ++++  LINY+SN     +L  +  V    + CK  GN
Sbjct: 242 NNELIPAIIVARNLINYESNQMDAVKLISDTFVEPYQYHCKQLGN 286


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 268 DFIFFFCCIFNVACVLHIIYFIFVIFLTIK 357
           +F  F  C F V+ +LH  +F+ V+ + I+
Sbjct: 365 EFCLFLACSFVVSFLLHGSFFLAVLSVDIR 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,405
Number of Sequences: 5004
Number of extensions: 43364
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)