Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D18
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...   159   3e-40
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|...   122   3e-29
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|...   117   1e-27
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    31   0.18 
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    30   0.23 
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   5.0  
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    26   5.0  

>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score =  159 bits (386), Expect = 3e-40
 Identities = 77/99 (77%), Positives = 89/99 (89%)
 Frame = +2

Query: 113 SAXAGLQFPVGSIHRHLKHRXTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVK 292
           SA AGLQFPVG + R LK +  ++ RVGA +AVYSAA+LEYLTAEVLELAGNA+KDLKVK
Sbjct: 59  SARAGLQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDLKVK 118

Query: 293 RITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLI 409
           RITPRHLQLAIRGDEELD+LI+ATIAGGGV+PHI+K L+
Sbjct: 119 RITPRHLQLAIRGDEELDTLIRATIAGGGVLPHINKQLL 157


>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score =  122 bits (295), Expect = 3e-29
 Identities = 65/109 (59%), Positives = 79/109 (72%), Gaps = 1/109 (0%)
 Frame = +2

Query: 113 SAXAGLQFPVGSIHRHLKHRXTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVK 292
           SA AGL FPVG +HR L+    +  RVGA A VY AA+LEYL AE+LELAGNA++D K  
Sbjct: 20  SAKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKT 78

Query: 293 RITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 436
           RI PRHLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K+ G G P
Sbjct: 79  RIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKGKP 127


>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 132

 Score =  117 bits (282), Expect = 1e-27
 Identities = 63/105 (60%), Positives = 76/105 (72%), Gaps = 1/105 (0%)
 Frame = +2

Query: 113 SAXAGLQFPVGSIHRHLKHRXTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVK 292
           SA AGL FPVG +HR L+    +  RVGA A VY AA+LEYL AE+LELAGNA++D K  
Sbjct: 20  SAKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKT 78

Query: 293 RITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 424
           RI PRHLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K  G
Sbjct: 79  RIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKTSG 123


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 18/74 (24%), Positives = 35/74 (47%)
 Frame = +2

Query: 131 QFPVGSIHRHLKHRXTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 310
           +FPV  I + +       G+V     V  +  LE     +++ +   ++  + KR+T  H
Sbjct: 23  RFPVARIKK-IMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTVSH 81

Query: 311 LQLAIRGDEELDSL 352
           L+ A++  E+ D L
Sbjct: 82  LKHAVQSVEQFDFL 95


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 220 RYFGISYSRGFGVGGKCV*RFKSEAYYSSALTTCY 324
           +Y G +YS G  V GKCV +F +  +     +T Y
Sbjct: 311 QYLGTNYSNGTAVDGKCVTQFDNVGFLVGTSSTRY 345


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 333 SPLIASCKCRGVIRFTFKS-LDAFPANSKTSAVRYSKIAAE*TAAVAPTRP 184
           SPL   CKC G IR+  +  L  +  +SK +     K   E T   + + P
Sbjct: 19  SPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKFEFTKVYSESMP 69


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 272 SKDLKV-KRITPRHLQLAIRGDEELDSLIKATIAGG 376
           +K+L + K +TP ++ + +  DE +DSLI+ +   G
Sbjct: 69  NKELSITKPLTPDNICMGVGSDEIIDSLIRISCIPG 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,301,609
Number of Sequences: 5004
Number of extensions: 43816
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)