Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D16
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, An...    26   2.6  
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...    26   3.4  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   3.4  

>SPBC1734.04 ||SPBC337.20|mannosyltransferase complex subunit, Anp
           family |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = +3

Query: 126 WVSTQQPQEVHTYCGRHLARTMADLCWEEGVDKRSDAQFASY 251
           W+  +QP +++++     A  +AD   E+ V     A++A++
Sbjct: 254 WLGNEQPYDLNSWAESETALQLADTLGEDDVIVEGYAEYATW 295


>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 96  AIALMLSTVMWVSTQQPQEVHTYCGRHLARTMADLCWEEGVDK 224
           AIAL+    +++ T + ++V T  G HL+R +  +  + G  K
Sbjct: 155 AIALLRLDDLYIDTFEIKDVKTLQGDHLSRAIGRIAGQGGKTK 197


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = -3

Query: 205 QHRSAIVRAKWRPQYVCTSCGCCVDTHITVDNINAIARSIF 83
           + R  ++  K R  ++C  C C  D  +T+     + R  F
Sbjct: 3   KERPGVLFNKIRSYFICPGCNCLPDWPVTLPCGGTVCRKCF 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,782
Number of Sequences: 5004
Number of extensions: 28984
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)