Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D16
         (477 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0665 + 5001599-5003149                                           35   0.039
05_01_0429 + 3399266-3399708,3401320-3401382,3403919-3404345,340...    30   1.1  
07_01_0534 - 3949551-3950350,3950997-3951006                           29   1.9  
04_04_1290 + 32399905-32399972,32400502-32400571,32400950-324017...    28   4.5  
12_01_0257 + 1898950-1899636                                           27   5.9  
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850...    27   7.8  

>07_01_0665 + 5001599-5003149
          Length = 516

 Score = 34.7 bits (76), Expect = 0.039
 Identities = 19/38 (50%), Positives = 25/38 (65%)
 Frame = +3

Query: 72  SPNMKILLAIALMLSTVMWVSTQQPQEVHTYCGRHLAR 185
           S N  I+L++A +L TV+W S Q  Q +H   GRHLAR
Sbjct: 12  SVNSGIVLSLAAVLWTVVWNSLQSLQ-LHHLVGRHLAR 48


>05_01_0429 +
           3399266-3399708,3401320-3401382,3403919-3404345,
           3404863-3405141
          Length = 403

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 260 RGAVARELSIAALIHAFFPA*VGHSAS*VAP 168
           RGAVAR+++ A   H FF   VGH     AP
Sbjct: 46  RGAVARQVATACAAHGFFRC-VGHGVPAAAP 75


>07_01_0534 - 3949551-3950350,3950997-3951006
          Length = 269

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 359 SSGLTVRQKHVHAAGSETALIHDAASC 279
           +SG TV Q    AAGSE  L+  AA C
Sbjct: 82  ASGATVEQARAAAAGSEARLLWPAARC 108


>04_04_1290 +
           32399905-32399972,32400502-32400571,32400950-32401734,
           32403068-32403674
          Length = 509

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 313 DPAAWTCFCRTVRPLLYQTNSFSKHL 390
           DP +WTC    V  ++ +   FS HL
Sbjct: 19  DPNSWTCMTELVSDVVVEVGDFSFHL 44


>12_01_0257 + 1898950-1899636
          Length = 228

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 214 AWISAAMLSSRATAPRG*CPTRQDAASWMSAVSD 315
           +WI A+  SS +T      PTR+ AASW++   D
Sbjct: 43  SWIRASRTSSSSTPG----PTRRTAASWLAVTFD 72


>07_03_1591 +
           27967065-27967090,27967236-27968054,27984940-27985022,
           27985590-27985744,27985956-27986461,27986551-27986703,
           27987146-27987485,27987558-27987822,27987897-27988634,
           27989734-27989779,27989849-27990223,27991511-27991567,
           27991640-27992438
          Length = 1453

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -3

Query: 343 YDRSTSTLQGLRQHSSTMPRPAE*GISHA 257
           +DR+T+ L+GLR+    +P  ++ G+ +A
Sbjct: 860 FDRATAVLKGLRKQLEEIPPDSDVGVGNA 888


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,393,315
Number of Sequences: 37544
Number of extensions: 218555
Number of successful extensions: 602
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)