Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D16
         (477 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_49927| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -3

Query: 196 SAIVRAKWRPQ--YVCTSCGCCVDTHITVDNI 107
           S++ R KWRPQ  Y   SC   VD  I V +I
Sbjct: 465 SSVSRIKWRPQKKYQIASCALLVDFDIHVWDI 496


>SB_49927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 350 LTVRQKHVHAAGSETALIHDAASCRVGHQPRGAVARELSIA 228
           +T+RQKH   +GS++ L+  +   RV    R     ++ I+
Sbjct: 28  ITLRQKHSQLSGSDSVLLTKSQINRVEKSKRNRTGTDMKIS 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,091,903
Number of Sequences: 59808
Number of extensions: 246050
Number of successful extensions: 583
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)