Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D16
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   1.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   3.9  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   5.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.0  

>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = -3

Query: 286 RPAE*GISHAEP*LAN*ASLRLSTPSSQHRSAIVRAKWRPQYV--CTSCGCCVDTHITVD 113
           RP E  ++   P + +   + L++P  +       A   P  +  CT+CG    TH T +
Sbjct: 368 RPGENPVTQRLPAVLSRIGIILASPLKREGGPPTGATTGPNEIVTCTNCGPNPCTHTTTN 427

Query: 112 NINAIAR 92
              A  R
Sbjct: 428 GCTAELR 434


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 301 SAVSDPAAWTCFCRTVRPLLYQTN 372
           SA SD      F RTV P  +QT+
Sbjct: 133 SAFSDKNIHVSFLRTVPPYSHQTD 156


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 163 YVCTSCGCCVDTHITV 116
           Y C  CG C D   TV
Sbjct: 73  YTCPICGACGDIAHTV 88


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 202 AGKKAWISAAMLSSRATAPR 261
           A    ++SAA  SS +T+PR
Sbjct: 824 ASSPRYLSAAATSSTSTSPR 843


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 157 CTSCGCCVDTHITVDNINAIAR 92
           CT+CG    TH T +   A  R
Sbjct: 427 CTNCGPNPCTHTTTNGCTAELR 448


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 157 CTSCGCCVDTHITVDNINAIAR 92
           CT+CG    TH T +   A  R
Sbjct: 447 CTNCGPNPCTHTTTNGCTAELR 468


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 157 CTSCGCCVDTHITVDNINAIAR 92
           CT+CG    TH T +   A  R
Sbjct: 396 CTNCGPNPCTHTTTNGCTAELR 417


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,915
Number of Sequences: 438
Number of extensions: 1929
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)