Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D15
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom...    30   0.41 
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi...    27   2.9  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.0  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    26   6.7  

>SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 695 VKSWTGVATWRWVXNDDNCGI 757
           +K W  VA W+W    DNC I
Sbjct: 23  IKKWNAVALWQWDIVVDNCAI 43


>SPAC343.03 |apc11||anaphase-promoting complex subunit
           Apc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 94

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +2

Query: 683 MKVTVKSWTGVATWRW-VXNDDNCGI 757
           MKV +  +  +A W W    DD CGI
Sbjct: 1   MKVKILRYHAIANWTWDTPKDDVCGI 26


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 656 VLDLFNHKILHNHINDF 606
           V D  NH+ILH+H+ +F
Sbjct: 718 VRDAKNHEILHSHVEEF 734


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 719 LQPLSNFLQLLS*RDHKDRIEVLDLFNHKILHNHI 615
           L PLS +   +  RD ++ IE LDLF   +LH  +
Sbjct: 16  LPPLSLYNFYIYIRDEENAIEFLDLFLDIMLHKFL 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,519
Number of Sequences: 5004
Number of extensions: 45151
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)