Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D15
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70757-5|CAA94801.1|  110|Caenorhabditis elegans Hypothetical pr...    31   0.88 
AB077287-1|BAB83695.1|  101|Caenorhabditis elegans RING-H2 finge...    31   0.88 
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   3.6  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   3.6  
Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AF045642-11|AAC02584.1|  443|Caenorhabditis elegans Hypothetical...    28   8.2  

>Z70757-5|CAA94801.1|  110|Caenorhabditis elegans Hypothetical
           protein ZK287.5 protein.
          Length = 110

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 695 VKSWTGVATWRWVXNDDNCGI 757
           VK W+ VA W W    DNC I
Sbjct: 26  VKKWSAVALWAWDIQVDNCAI 46


>AB077287-1|BAB83695.1|  101|Caenorhabditis elegans RING-H2 finger
           protein Rbx1 protein.
          Length = 101

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 695 VKSWTGVATWRWVXNDDNCGI 757
           VK W+ VA W W    DNC I
Sbjct: 17  VKKWSAVALWAWDIQVDNCAI 37


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 97   HVGFFTVSSLCKCTNVGKC 153
            HV   T+   CKCTN GKC
Sbjct: 4518 HVEALTMPKQCKCTNGGKC 4536


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 97   HVGFFTVSSLCKCTNVGKC 153
            HV   T+   CKCTN GKC
Sbjct: 4518 HVEALTMPKQCKCTNGGKC 4536


>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/36 (50%), Positives = 20/36 (55%)
 Frame = -3

Query: 728 TSKLQPLSNFLQLLS*RDHKDRIEVLDLFNHKILHN 621
           TSK  PLS  L L S   HK    +L LF+HKI  N
Sbjct: 16  TSKKAPLSFCLPLRS--THKQHFSMLLLFSHKIPQN 49


>AF045642-11|AAC02584.1|  443|Caenorhabditis elegans Hypothetical
          protein C17H12.5 protein.
          Length = 443

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 71 TKETKENKAHHGTSARVPPKKAK 3
          TKE K  K H+  S+ VPPKK K
Sbjct: 3  TKEKKTKKPHNVKSSVVPPKKWK 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,656,946
Number of Sequences: 27780
Number of extensions: 257152
Number of successful extensions: 706
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)