Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D15
         (757 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20570.1 68418.m02442 ring-box protein-related similar to rin...    31   0.62 
At3g01360.1 68416.m00057 expressed protein contains Pfam profile...    30   1.9  
At3g42830.1 68416.m04485 ring-box protein Roc1/Rbx1/Hrt1, putati...    29   4.4  

>At5g20570.1 68418.m02442 ring-box protein-related similar to
           ring-box protein 1 GI:4769004 from [Homo sapiens]
          Length = 118

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 677 RAMKVTVKSWTGVATWRWVXNDDNCGI 757
           +A +  +K W+ VA W W    DNC I
Sbjct: 28  KAKRFEIKKWSAVALWAWDIVVDNCAI 54


>At3g01360.1 68416.m00057 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 319

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +2

Query: 146 ANATKPLXVTSRAPPKSQLKKS**MPTILLSLYFIASSHFLSFNFI 283
           A+++ P+     +PPKS    S  +P  LLS  FIA+S F  F+ I
Sbjct: 36  ADSSSPMAQIRASPPKSVGSSS--IPVALLSSLFIANSFFSFFSSI 79


>At3g42830.1 68416.m04485 ring-box protein Roc1/Rbx1/Hrt1, putative
           E3 ubiquitin ligase, SCF complex subunit; contains
           similarity to ring-box protein 1 RBX1 GI:4769004 from
           [Homo sapiens]
          Length = 115

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 695 VKSWTGVATWRWVXNDDNCGI 757
           +K W+ VA W W    DNC I
Sbjct: 31  LKKWSAVALWAWDIVVDNCAI 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,474,734
Number of Sequences: 28952
Number of extensions: 225129
Number of successful extensions: 487
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)