Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D14
         (432 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)                29   2.2  
SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)                27   5.0  
SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)                      27   5.0  
SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017)        27   5.0  
SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9)                   27   8.7  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +1

Query: 16  LSTFVSDRFXKMAKRPKKV---GITGKXGTRYGASLRKMVKKXEVTQHAKYTC 165
           +ST  S  + K+  R       GIT    T Y +S +K+V +   T+ A  TC
Sbjct: 1   MSTHYSSPYKKLVPRQLTTRWSGITCMMSTHYSSSYKKLVPRQLTTRWASITC 53


>SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)
          Length = 351

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 103 GASLRKMVKKXEVTQHAKYTCSFCGK 180
           G   +K ++  E++ H KY CS CGK
Sbjct: 210 GGVTKKQIQSNEIS-HKKYVCSTCGK 234


>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
          Length = 300

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 165 LILW*GCYETFL-CRHLVL*AMQEDCSRRSLGILHYCCLIMQICCQEV 305
           ++L  GCY   L C H+V   M   C    + +L   C++M ICC +V
Sbjct: 127 VVLSLGCYVVMLLCHHVV---MSLSCY---IDMLLCRCVVMSICCYDV 168


>SB_59058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/76 (18%), Positives = 31/76 (40%)
 Frame = -2

Query: 335 VYYLNYFTSRNLLTADLHDEAAVVENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVY 156
           + + + F   N   A +   + V     +    +L+         +++  AS  + E  +
Sbjct: 122 ILHHSIFWGNNFWFAAVTPPSDVTNKPSSASRGLLVLLFSQAAALRKKIAASCWEKESEF 181

Query: 155 FACWVTSXFLTILRRE 108
           + CWV S F+T  + +
Sbjct: 182 YECWVASFFITTAKTQ 197


>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
          Length = 298

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 160 TCSFCGKDAMKRS 198
           TC+FCGKDA K S
Sbjct: 243 TCNFCGKDARKTS 255


>SB_34877| Best HMM Match : Methyltransf_2 (HMM E-Value=0.00017)
          Length = 893

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = -2

Query: 290 DLHDEAAVVENTQAPPATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTSXFLT 123
           D H    V EN +    T    RL D +   +  +  +  +  VYF       FLT
Sbjct: 670 DKHSAEHVAENVKPSCKTGSTRRLLDTLVAMQLLVKEMDSDPPVYFNSQTAEAFLT 725


>SB_38395| Best HMM Match : TAFII28 (HMM E-Value=2.9)
          Length = 292

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 299 LTADLHDEAAVVENTQAP 246
           +TADLHD A VV N + P
Sbjct: 247 ITADLHDTARVVVNLRTP 264


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 299  LTADLHDEAAVVENTQAP 246
            +TADLHD A VV N + P
Sbjct: 972  ITADLHDTARVVVNLRTP 989


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,768,795
Number of Sequences: 59808
Number of extensions: 210791
Number of successful extensions: 549
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)