Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D14
         (432 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)         125   1e-29
At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB) si...   118   2e-27
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui...    27   7.2  
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui...    27   7.2  
At1g62420.1 68414.m07042 expressed protein contains Pfam profile...    27   7.2  
At4g28730.1 68417.m04109 glutaredoxin family protein contains gl...    26   9.6  

>At3g60245.1 68416.m06733 60S ribosomal protein L37a (RPL37aC)
          Length = 92

 Score =  125 bits (301), Expect = 1e-29
 Identities = 55/88 (62%), Positives = 66/88 (75%)
 Frame = +1

Query: 49  MAKRPKKVGITGKXGTRYGASLRKMVKKXEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 228
           MAKR KKVGI GK GTRYGAS+RK +KK EV+QH+KY C FCGK  +KR  VGIW CK C
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60

Query: 229 KRTVAGGAWVFSTTAASSCRSAVRRLRE 312
            +  AGGA+  +T +A + RS +RRLRE
Sbjct: 61  GKVKAGGAYTMNTASAVTVRSTIRRLRE 88


>At3g10950.1 68416.m01320 60S ribosomal protein L37a (RPL37aB)
           similar to putative 60S ribosomal protein L37a
           GB:AAD28753 [Gossypium hirsutum]
          Length = 92

 Score =  118 bits (284), Expect = 2e-27
 Identities = 53/88 (60%), Positives = 63/88 (71%)
 Frame = +1

Query: 49  MAKRPKKVGITGKXGTRYGASLRKMVKKXEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRC 228
           M KR KK  I GK GTRYGASLRK +KK EV+QH KY C FCGK ++KR  VGIW CK C
Sbjct: 1   MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 229 KRTVAGGAWVFSTTAASSCRSAVRRLRE 312
            +  AGGA+  +T +A + RS +RRLRE
Sbjct: 61  GKVKAGGAYTMNTASAVTVRSTIRRLRE 88


>At4g38600.2 68417.m05463 HECT-domain-containing protein /
           ubiquitin-transferase family protein similar to
           SP|Q14669Thyroid receptor interacting protein 12
           (TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
           HECT-domain (ubiquitin-transferase)
          Length = 1794

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 254 QAPPATVLLHRLQDQMPTQERF 189
           + PP TVL+ +LQ+ + + ERF
Sbjct: 802 KVPPMTVLIQKLQNALSSLERF 823


>At4g38600.1 68417.m05464 HECT-domain-containing protein /
           ubiquitin-transferase family protein similar to
           SP|Q14669Thyroid receptor interacting protein 12
           (TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
           HECT-domain (ubiquitin-transferase)
          Length = 1888

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 254 QAPPATVLLHRLQDQMPTQERF 189
           + PP TVL+ +LQ+ + + ERF
Sbjct: 875 KVPPMTVLIQKLQNALSSLERF 896


>At1g62420.1 68414.m07042 expressed protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 465

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -3

Query: 112 ERHRNVCXICQ*FQPFWDVWPFWXTDPRQKL 20
           + H +   +C  F  +   W  W T PR++L
Sbjct: 346 DNHHSPLFLCDCFSCYTSYWVRWDTSPRRQL 376


>At4g28730.1 68417.m04109 glutaredoxin family protein contains
           glutaredoxin domain, Pfam:PF00462
          Length = 174

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 91  GTRYGASLRKMVKKXEVTQHAKYTCSFC 174
           G+R   S+RK V +  V  ++K  CS+C
Sbjct: 66  GSRMEESIRKTVTENTVVIYSKTWCSYC 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,369,066
Number of Sequences: 28952
Number of extensions: 139280
Number of successful extensions: 387
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)