Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_D13
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 189 3e-49
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 167 8e-43
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 127 1e-30
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 97 2e-21
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 43 3e-05
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 42 7e-05
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 41 1e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 40 4e-04
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 38 0.002
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 35 0.008
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 35 0.008
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 34 0.019
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 33 0.025
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 33 0.025
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 33 0.043
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 32 0.057
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 32 0.057
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 32 0.076
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 31 0.13
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 30 0.23
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 29 0.53
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 28 1.2
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 27 1.6
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 27 1.6
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 27 1.6
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 27 2.8
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 26 3.8
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 6.6
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 6.6
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 25 8.7
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 189 bits (460), Expect = 3e-49
Identities = 89/166 (53%), Positives = 122/166 (73%), Gaps = 1/166 (0%)
Frame = +1
Query: 118 GLLISKIW-SLFGNEEHKLVLVGLDNAGKTTILYQLLLGEAVHTRPTIGSNVEEVVWKNL 294
GL ISK++ SLFG E ++++VGLD AGKTTILY+L LGE V T PTIG NVE V ++N+
Sbjct: 2 GLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNI 61
Query: 295 RFVMWDLGGQQSLRSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHEELSKACL 474
F +WD+GGQ +R W Y+ N++ +I V+DS DR+R+ + EEL RML +EL A L
Sbjct: 62 SFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALL 121
Query: 475 LVFANKQDVKGSMTAAEISEQLXLTSIKQHPWHIQACCALTGEGLH 612
LVFANKQD+ +M AAEI+++L L S++ W+IQA CA +G+GL+
Sbjct: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLY 167
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 167 bits (407), Expect = 8e-43
Identities = 73/155 (47%), Positives = 111/155 (71%)
Frame = +1
Query: 145 LFGNEEHKLVLVGLDNAGKTTILYQLLLGEAVHTRPTIGSNVEEVVWKNLRFVMWDLGGQ 324
LF N+E +++++GLD AGKTTILY+L L ++V T PT+G NVE V +KN++F +WD+GGQ
Sbjct: 16 LFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQ 75
Query: 325 QSLRSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHEELSKACLLVFANKQDVK 504
+R W Y+T ++ +I V+DS D R+ +R+ELHR++ E+ LLV ANKQD+
Sbjct: 76 DKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLP 135
Query: 505 GSMTAAEISEQLXLTSIKQHPWHIQACCALTGEGL 609
G+++ A+I++ L L +K W++Q CALTG+GL
Sbjct: 136 GALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGL 170
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 127 bits (306), Expect = 1e-30
Identities = 63/147 (42%), Positives = 92/147 (62%)
Frame = +1
Query: 160 EHKLVLVGLDNAGKTTILYQLLLGEAVHTRPTIGSNVEEVVWKNLRFVMWDLGGQQSLRS 339
E +++L+GLDNAGKTTIL LL + PT G + + + LRF +WD+GGQ++LR+
Sbjct: 16 EVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTLRN 75
Query: 340 AWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHEELSKACLLVFANKQDVKGSMTA 519
W Y+ ++E +I V+DS D RL R L +LV E+L +LV ANK DV G++++
Sbjct: 76 FWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGALSS 135
Query: 520 AEISEQLXLTSIKQHPWHIQACCALTG 600
EIS+ L ++ K W I + ALTG
Sbjct: 136 EEISKILNISKYKSSHWRIFSVSALTG 162
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 97.1 bits (231), Expect = 2e-21
Identities = 47/131 (35%), Positives = 73/131 (55%)
Frame = +1
Query: 154 NEEHKLVLVGLDNAGKTTILYQLLLGEAVHTRPTIGSNVEEVVWKNLRFVMWDLGGQQSL 333
N+ K++ +GLDNAGKTT+L+ L +PT+ EE+ N+RF +DLGG Q
Sbjct: 18 NKHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQA 77
Query: 334 RSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHEELSKACLLVFANKQDVKGSM 513
R W Y+ ++ ++D D +RL S+ EL +L EEL++ L+ NK D G++
Sbjct: 78 RRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAI 137
Query: 514 TAAEISEQLXL 546
+ E+ L L
Sbjct: 138 SEDELKAALGL 148
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 43.2 bits (97), Expect = 3e-05
Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Frame = +1
Query: 148 FGNEEHKLVLVGLDNAGKTTILYQLLLGEAVHT-RPTIGSN-VEEVVW---KNLRFVMWD 312
F + KLV +G + GKT+++ + + + +T + TIG + + + ++ + +R +WD
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 313 LGGQQSLRSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHEELSKACLLVFANK 492
GQ+ RS +Y +S I+V D T+ ++ E+ + E +++ NK
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSF-VNTEKWIEDVRAERGDDVIIVLVGNK 125
Query: 493 QDV 501
D+
Sbjct: 126 TDL 128
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 41.9 bits (94), Expect = 7e-05
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Frame = +1
Query: 166 KLVLVGLDNAGKTTILYQLLLGEAVHTRP---TIGSNVE----EVVWKNLRFVMWDLGGQ 324
KL+L+G GK+ +L L + +T TIG + + E+ K ++ +WD GQ
Sbjct: 10 KLLLIGDSGVGKSCLL--LRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQ 67
Query: 325 QSLRSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHEELSKACLLVFANKQDV 501
+ R+ ++YY + +I+V D TD+ ++ L + + LLV NK D+
Sbjct: 68 ERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLV-GNKSDM 125
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 41.1 bits (92), Expect = 1e-04
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Frame = +1
Query: 166 KLVLVGLDNAGKTTILYQLLLGEA-VHTRPTIGSN--VEEVVWKN--LRFVMWDLGGQQS 330
K VL+G GK+ +L + E + ++ TIG +V N ++ +WD GQ+
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 331 LRSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHEELSKACLLVFANKQDV 501
R+ + YY + ++V D T + L + H + S +++ NK D+
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHAD-SNIVIMLVGNKTDL 127
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 39.5 bits (88), Expect = 4e-04
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = +1
Query: 166 KLVLVGLDNAGKTTILYQLLLGEAVHTR-PTIGSNVEEVVWKN----LRFVMWDLGGQQS 330
KLVLVG GKTT + + L GE T+G V + + + F +WD GQ+
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 331 LRSAWNTYYTNSEFVIMVIDSTDR 402
L + YY + I++ D T R
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSR 94
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Frame = +1
Query: 166 KLVLVGLDNAGKTTILYQLLLGEAVHTR-PTIGSNVE----EVVWKNLRFVMWDLGGQQS 330
KL+L+G GK+ +L + + TIG + + E+ K ++ +WD GQ+
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQER 70
Query: 331 LRSAWNTYYTNSEFVIMVIDSTDRQ 405
R+ YY + ++++ D TD++
Sbjct: 71 FRTITTAYYRGAMGILLLYDVTDKK 95
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 35.1 bits (77), Expect = 0.008
Identities = 23/87 (26%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Frame = +1
Query: 151 GNEEH--KLVLVGLDNAGKTTILYQLLLGE-AVHTRPTIGSN--VEEVVW--KNLRFVMW 309
G ++H K++++G GKT+I+ Q + + + + TIG++ +EV+ K + +W
Sbjct: 3 GKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLW 62
Query: 310 DLGGQQSLRSAWNTYYTNSEFVIMVID 390
D GQ+ +S +Y ++ ++V D
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVYD 89
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 35.1 bits (77), Expect = 0.008
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 12/125 (9%)
Frame = +1
Query: 166 KLVLVGLDNAGKTTILYQLLLGE-AVHTRPTIGSNVEEVV--------WKNLRFVMWDLG 318
K+VL G GK+ +L + + + T+G + + K ++ +WD
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTA 70
Query: 319 GQQSLRSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHEEL---SKACLLVFAN 489
GQ+ RS YY + ++V D T++ S EEL L S C+++ +
Sbjct: 71 GQEKFRSVARNYYRGAAGAVLVYDVTNKD----SFEELSSWLSDIRAMAPSTICVVLAGS 126
Query: 490 KQDVK 504
K D++
Sbjct: 127 KSDLQ 131
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 33.9 bits (74), Expect = 0.019
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 4/138 (2%)
Frame = +1
Query: 166 KLVLVGLDNAGKTTILYQLLLGEAVHTR-PTIGSNVE---EVVWKNLRFVMWDLGGQQSL 333
KLV+VG GKT +L G PT+ N EV +++ +WD GQ+
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDY 67
Query: 334 RSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHEELSKACLLVFANKQDVKGSM 513
Y +S +++ L +E+ ++H S LLV A K D++
Sbjct: 68 DRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLV-ACKADLRND- 125
Query: 514 TAAEISEQLXLTSIKQHP 567
+I E+L T+ QHP
Sbjct: 126 --PKIIEELSKTN--QHP 139
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 33.5 bits (73), Expect = 0.025
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 5/127 (3%)
Frame = +1
Query: 175 LVGLDNAGKTTILYQLLLGEAVHTRPTIGSNVEEVVWKNLRFVMWDLGGQQSLRSAWNTY 354
L+G ++GKT++ +L+ E T P+I N E VWK +++ DL G + T
Sbjct: 42 LIGPSDSGKTSLFCELIYKEKKTTVPSIEPN--EAVWKYGAWLV-DLPGHPRAKRWITTK 98
Query: 355 YT---NSEFVIMVIDST--DRQRLGISREELHRMLVHEELSKACLLVFANKQDVKGSMTA 519
++ N + V+ V++S DR + +L + LL+ NK D+ + A
Sbjct: 99 FSGNYNVKAVVFVLNSATIDRDVHEVGLMLFDTILKCRKHHVPHLLIACNKFDLFTAQPA 158
Query: 520 AEISEQL 540
+I + L
Sbjct: 159 EKIQQLL 165
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 33.5 bits (73), Expect = 0.025
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Frame = +1
Query: 166 KLVLVGLDNAGKTTILYQLLLGE-AVHTRPTIGSNVE---EVVWKNLRFVMWDLGGQQSL 333
KLV+VG GKT++L LG PT+ N V K+++ +WD GQ+
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 334 RSAWNTYYTNSEFVIM--VIDSTD 399
Y + +++ IDS D
Sbjct: 70 ERLRPMSYAKAHIILVGFAIDSPD 93
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 32.7 bits (71), Expect = 0.043
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Frame = +1
Query: 166 KLVLVGLDNAGKTTILYQLLLGEAVHTRP-TIGSNVEEVVWK-----NLRFVMWDLGGQQ 327
KLVL+G GK++++ + + + R TIG+ +++ +WD GQ+
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 328 SLRSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHEELSKACLLVFANKQDVKG 507
+S YY N+ I+V D T L ++ + + L + + + NK D+
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWI-KELQRQAPEGIVIALAGNKLDLAQ 134
Query: 508 SMTAAE 525
A E
Sbjct: 135 ERRAVE 140
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 32.3 bits (70), Expect = 0.057
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 5/132 (3%)
Frame = +1
Query: 160 EHKLVLVGLDNAGKTTILYQLLLGEAV-HTRPTIGSNVE---EVVWKNLRFVMWDLGGQQ 327
E+KLV+VG GK+ + QL+ V PTI + E+ + + D GQ+
Sbjct: 8 EYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQE 67
Query: 328 SLRSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHEELSKACLLVFANKQDVKG 507
+ Y E ++V + T R ++L ++ +++ ANK D++
Sbjct: 68 EYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEA 127
Query: 508 SMTAAEI-SEQL 540
+ EQL
Sbjct: 128 ERVVSRAEGEQL 139
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 32.3 bits (70), Expect = 0.057
Identities = 28/133 (21%), Positives = 61/133 (45%), Gaps = 8/133 (6%)
Frame = +1
Query: 166 KLVLVGLDNAGKTTILYQLLLGE-AVHTRPTIGSN--VEEVVW--KNLRFVMWDLGGQQS 330
K+V++G GKT ++ Q + + + + TIG++ ++VV K + +WD GQ+
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 331 LRSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHEELSKAC---LLVFANKQDV 501
+S +Y ++ ++V + + + S E + +++ C ++ N+ D
Sbjct: 70 FQSLGMAFYRGADCCVIVYNVNNSKSFD-SVENWRQEFLYQTSQDECAFPFIIVGNQIDK 128
Query: 502 KGSMTAAEISEQL 540
S A + L
Sbjct: 129 DASKRAVSLHRAL 141
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 31.9 bits (69), Expect = 0.076
Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 6/136 (4%)
Frame = +1
Query: 166 KLVLVGLDNAGKTTILYQLLLGEAVHTR-PTIGSN-VEEVVW----KNLRFVMWDLGGQQ 327
KLV+VG GKT +L G PT+ N + ++ + K + +WD GQ+
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 328 SLRSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHEELSKACLLVFANKQDVKG 507
Y NS +++ L E+ + + H + +++ K D++
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQH-FCPRTPIVLVGLKADLRK 134
Query: 508 SMTAAEISEQLXLTSI 555
A E+ LT +
Sbjct: 135 DRNATEVLRTQGLTPV 150
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 31.1 bits (67), Expect = 0.13
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 5/128 (3%)
Frame = +1
Query: 166 KLVLVGLDNAGKTTILYQLLLGEAVHTR-PTIGSNVE---EVVWKNLRFVMWDLGGQQSL 333
KLV+VG GKT +L G PT+ N EV +++ +WD GQ+
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 334 RSAWNTYYTNSEFVIMVIDSTDRQRLGISREELHRMLVHEELSKACLLVFANKQDVKGS- 510
Y +S V++ + L +E+ ++H S +L+ K D++
Sbjct: 68 DRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLH-FCSNLPILLVGCKVDLRNDP 126
Query: 511 MTAAEISE 534
T E+S+
Sbjct: 127 KTIEELSK 134
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 30.3 bits (65), Expect = 0.23
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Frame = +1
Query: 166 KLVLVGLDNAGKTTILYQLLLGEA-VHTRPTIGSNVEE--VVWKN--LRFVMWDLGGQQS 330
K+ ++G + GKT+++ + G + T+G N E + +N + F +WDLGGQ+
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQRE 71
Query: 331 LRSAWNTYYTNSEFVIMVIDSTDRQRLGISRE 426
+ ++ ++ + D + + L +E
Sbjct: 72 FVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 29.1 bits (62), Expect = 0.53
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = +1
Query: 253 TIGSNVEEVVWKNLRFVMWDLGGQQSLRSAWNTYYTNSEFVIMVIDSTDRQRLGISREEL 432
T+G + +L+ M+D+GGQ++ R W + N +I + D + R
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAP 238
Query: 433 HRMLVHEELS 462
R + E +S
Sbjct: 239 ERNRLVESIS 248
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 27.9 bits (59), Expect = 1.2
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = -3
Query: 355 SKYSMLISSFVVLLSPTSQTGDSSTQPLQHSTLWWAEYVQLHQEVVGIK*WFCQHCRDPP 176
S+ S L + V + SQ GDSS ++ +LW E +LHQ F + CR
Sbjct: 268 SEVSNLWNKLQVSPNEQSQFGDSSNINQENISLWETELEKLHQLKKEHLPIFLEDCRQQI 327
Query: 175 IRVY 164
++++
Sbjct: 328 LQLW 331
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 319 GQQSLRSAWNTYYTNSEFVIMVIDSTDRQRLGISREELH 435
G S+ S + T TNS+ V+ D+TD +S+ EL+
Sbjct: 520 GYSSVTSGYGT--TNSKKVVASYDNTDDNEYSVSKSELY 556
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 27.5 bits (58), Expect = 1.6
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 19/147 (12%)
Frame = +1
Query: 130 SKIWSLFGNEEHKLVLVGLDNAGKTTILYQLLLGEAVHTRPTIGSNVEEVVWKNLRFVMW 309
SK L GN+ K+ + L+ TIL +L+ ++ + +N++E+ W++ R
Sbjct: 113 SKKKGLNGNDPKKVFEIALNG---NTILGGILVAYILYNVLSPNANMQEITWQDFRQQFL 169
Query: 310 DLGGQQS------------LRSAWNTYYTNSEFVIMVIDSTDR------QRLGISREELH 435
D G + LR + F I IDS DR ++LGI E
Sbjct: 170 DKGLVERLVVVNRNMVRVILRGGVASGSGQYYFSIGSIDSFDRKLEDAQRQLGIPPSEFV 229
Query: 436 RMLVHEELS-KACLLVFANKQDVKGSM 513
+ H+E+S A LL FA + GS+
Sbjct: 230 PVAYHDEVSVLATLLSFAPTLLIIGSV 256
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 142 SLFGNEEHKLVLVGLDNAGKTTILYQLLL 228
S G + K++L+G ++GKTTI+ Q+ L
Sbjct: 68 STSGGNDIKVLLLGAGDSGKTTIMKQMRL 96
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 232 EAVHTR-PTIGSNVEEVVWKNLRFVMWDLGGQQSLRSAWNTYYTNSEFVIMVI 387
+ +H R T G + E + + +D+GGQ+S R W + N ++ ++
Sbjct: 213 DILHCRIKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLV 265
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 26.6 bits (56), Expect = 2.8
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +1
Query: 127 ISKIWSLFGNEEHKLVLVGLDNAGKTTILYQLLLGEAVHTRPTIGSNVEEVVWKNLRFVM 306
+ + W + N+++ LV VG DN I + L E T + G +VVW N VM
Sbjct: 270 LDRAWCIAQNKDNGLVTVGFDNG---LITFSLGRDEPSVTMDSSG----KVVWSNYNEVM 322
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 89 DVNEGLHTXWAYLFRKYGAYSEMRNINSYWWVSTMLAKPLFYTNYF 226
+ NE L T + FR +S +R ++YW + L KPL +F
Sbjct: 186 EFNEQLTTKYGLEFRTI-FFSYIRKYDAYWCLFEDLEKPLKSIQFF 230
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 98 EGLHTXWAYLFRKYGAYSEMRNINSYWWVSTMLA 199
E L T W+YLF+ +G + + S++ V T L+
Sbjct: 17 EKLKTMWSYLFKLFG-ITLLERTESWYTVKTHLS 49
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 214 YQLLLGEAVHTRPTIGSNVEEVVWKNLRF 300
Y LLL + V T P+I N ++V++ +F
Sbjct: 95 YSLLLTQPVFTMPSIEHNTIQLVFEEFQF 123
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 25.0 bits (52), Expect = 8.7
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Frame = +1
Query: 166 KLVLVGLDNAGKTTILYQLLLGEAVHTRPTIGSNVEEVVWKNLRFV------MWDLGGQQ 327
K++L+G +GK+++ + +G+ ++ + ++RF+ +WD GGQ+
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATID-IEHSHVRFLGNLVLNLWDCGGQE 62
Query: 328 S-----LRSAWNTYYTNSEFVIMVIDSTDRQ 405
+ L + + + N + +I V D R+
Sbjct: 63 AFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,809
Number of Sequences: 5004
Number of extensions: 53312
Number of successful extensions: 189
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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