Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D11
         (646 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5NUB3 Cluster: Peptidase S15; n=2; Rhizobiales|Rep: Pe...    35   1.5  
UniRef50_Q75IG0 Cluster: Putative uncharacterized protein P0499F...    34   3.4  
UniRef50_Q965H3 Cluster: Polycomb protein sop-2; n=2; Caenorhabd...    33   4.5  
UniRef50_UPI0000E24DD1 Cluster: PREDICTED: hypothetical protein;...    33   5.9  
UniRef50_Q3JWZ5 Cluster: Putative uncharacterized protein; n=2; ...    33   5.9  
UniRef50_Q3W8J3 Cluster: Putative oxidoreductase; n=1; Frankia s...    33   5.9  
UniRef50_Q57Y35 Cluster: Putative uncharacterized protein; n=1; ...    33   7.8  

>UniRef50_A5NUB3 Cluster: Peptidase S15; n=2; Rhizobiales|Rep:
           Peptidase S15 - Methylobacterium sp. 4-46
          Length = 1220

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 22/58 (37%), Positives = 30/58 (51%)
 Frame = -2

Query: 585 RAGRRVLEGQALEDGDVEGSESVRQRVGSDAAPSKRHVEDARAAVERRHPRTAQRHAL 412
           RAG+  +  Q L  G V    + R RVG      +RH+++ R AVER   R  + HAL
Sbjct: 187 RAGQ--VPRQELRRGPVGHQPAARIRVGIRQQRRERHLDEVRVAVERLAVRVGELHAL 242


>UniRef50_Q75IG0 Cluster: Putative uncharacterized protein
           P0499F10.6; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0499F10.6 - Oryza sativa subsp. japonica (Rice)
          Length = 202

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
 Frame = -2

Query: 606 PQVQRGERAGRRVLEGQALE---DGDVEGSESVRQRVG-SDAAPSKRHVEDARAAVERRH 439
           P V  GER G R +   ALE   +G+V+ + + R R+G  +  PS+ H     AA  RRH
Sbjct: 79  PPVSEGERKGVRTVGVDALEATGEGEVQITLNDRGRIGVEEVLPSRAH--GRWAARSRRH 136

Query: 438 PRTAQR 421
            +  QR
Sbjct: 137 RQREQR 142


>UniRef50_Q965H3 Cluster: Polycomb protein sop-2; n=2;
           Caenorhabditis elegans|Rep: Polycomb protein sop-2 -
           Caenorhabditis elegans
          Length = 735

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = -2

Query: 612 EAPQVQRGERAGRRVLEGQALEDGDVEGSESVRQRVGSDAAPS-KRHVEDARAAVERRHP 436
           E P  Q  +   RR  E +  ED D    + V   V +DA+ S  R+    R    RR  
Sbjct: 376 ETPAAQPRKSLPRRAAEKKKPEDSDAAEEQEVEMEVDNDASTSTPRNARGGRGGGNRRGS 435

Query: 435 RTAQRHALG 409
           R  Q+   G
Sbjct: 436 RRGQKRTSG 444


>UniRef50_UPI0000E24DD1 Cluster: PREDICTED: hypothetical protein;
           n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
           protein - Pan troglodytes
          Length = 139

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = -2

Query: 609 APQVQRGERAGRRVLEGQALEDGDVEGSESVRQRVGSDAAPSKRHVEDARAAVERRHPRT 430
           AP + RG    RR  +G          ++ VR R+GS A P++   EDA AA     PR 
Sbjct: 25  APGLVRGRMGPRRRQQGHPSRRSLARRADGVRTRLGSAARPARAQREDA-AANPEPDPRA 83

Query: 429 AQR 421
            ++
Sbjct: 84  GRK 86


>UniRef50_Q3JWZ5 Cluster: Putative uncharacterized protein; n=2;
           Burkholderia|Rep: Putative uncharacterized protein -
           Burkholderia pseudomallei (strain 1710b)
          Length = 727

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
 Frame = -2

Query: 630 KSQEVLEAPQVQRGERAGR--RVLEGQALEDGDVEGSESVRQRVGSDAAPSKRHVEDARA 457
           K  E +E+P+ +R  ++GR  R+ E + L D          Q     A P  R   DAR 
Sbjct: 155 KGIESVESPERRRRAQSGRAHRLPEKRHLHDLHDHEPHREHQIAAQHAHPDARRQRDARR 214

Query: 456 A--VERRHPRTAQRHAL 412
              +ERRHP    R A+
Sbjct: 215 RQRIERRHPPRVARGAI 231


>UniRef50_Q3W8J3 Cluster: Putative oxidoreductase; n=1; Frankia sp.
           EAN1pec|Rep: Putative oxidoreductase - Frankia sp.
           EAN1pec
          Length = 578

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -2

Query: 576 RRVLEGQALEDGDVE--GSESVRQRVGSDAAPSKRHVEDARAAVERRHPRTAQRHALG 409
           RR   G+    G +   G+ S R+ VG   AP+ RH     A  +RRH    +RHALG
Sbjct: 39  RRARRGRRHRGGGLRRPGARSGRRTVGHRRAPALRH---RHAEPDRRHRPGGRRHALG 93


>UniRef50_Q57Y35 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 623

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 488 LRSVTLRTRAPPSNDGIP-APPSATPSGHSSSTY*ASEKF 372
           L S T  T  PP    IP AP SATP+G S +T  ++ +F
Sbjct: 402 LNSATAATSEPPKPFSIPAAPASATPTGGSETTPASANRF 441


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 431,254,816
Number of Sequences: 1657284
Number of extensions: 6928286
Number of successful extensions: 35691
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 32853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35639
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)