Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D11
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa...    29   0.76 
SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyce...    27   2.3  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    26   4.0  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    25   9.3  

>SPBC337.15c |coq7||ubiquinone biosynthesis protein
           Coq7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 265 GVQAARPACGRARDCVAGHHLNDEFFFTVHGQNLVINFSE 384
           G +AA  AC  A + V G H ND+   T H +N    F E
Sbjct: 126 GTKAAM-ACTEAVETVIGGHYNDQLRETAHLENKAPEFKE 164


>SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 189

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
 Frame = -2

Query: 573 RVLEGQALEDG-----DVEGSESVRQRVGSDAAPSKRHVEDARA 457
           RV E Q L D      D E +ES+RQ + S  +  +RH+E+ RA
Sbjct: 68  RVSEIQQLRDELKICKDQERAESIRQTLKSLLSKMERHLEEERA 111


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 485 RSVTLRTRAPPSNDGIPAPPSATPSGHS 402
           RS+T  ++  PS      P  +TPSG S
Sbjct: 106 RSITAPSKTEPSTPSTEKPEPSTPSGES 133


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 458 PPSNDGIPAPPSATPSGHSSSTY 390
           PPS+ G   PPS+  +G  SS +
Sbjct: 138 PPSSIGYVLPPSSLANGEGSSMF 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,557,817
Number of Sequences: 5004
Number of extensions: 21775
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)