Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_D11
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0483 + 3437707-3438342 32 0.45
02_04_0109 + 19812544-19814474,19814574-19814607 30 1.8
03_06_0423 + 33822904-33823545 29 3.2
02_05_1092 - 34049640-34049934,34050013-34050147,34050229-340503... 29 3.2
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208... 28 5.5
07_01_0513 + 3828196-3828309,3828408-3828722,3828823-3828879,382... 28 7.3
04_04_0762 - 27844427-27844542,27844876-27844912,27845436-278458... 28 7.3
03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447 28 7.3
06_02_0061 - 11043183-11043417,11043556-11043796,11043923-110441... 27 9.7
>06_01_0483 + 3437707-3438342
Length = 211
Score = 31.9 bits (69), Expect = 0.45
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = -2
Query: 636 EVKSQEVLEAPQVQRGERAGRRVLE--GQALEDGDVEGSESVRQRVGSDAAPSKRHVEDA 463
+V+ + + E + G R+G RV E G+A V G+ S+ + V + S+R +E+
Sbjct: 12 QVQLRSLEEEEEAAAGGRSGARVAEQEGEAFSWVIVGGAHSLEEEVAPVVSESERGMEEE 71
Query: 462 RAAVE 448
AAV+
Sbjct: 72 EAAVD 76
>02_04_0109 + 19812544-19814474,19814574-19814607
Length = 654
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = -2
Query: 609 APQVQRGERAGRRVLEGQALE---DGDVEGSESVRQRVGSDAAPSKRHVEDARAAVERRH 439
+P V +++ LE ++ E DGDVE + VR+ VG D KR+ + A H
Sbjct: 119 SPDVAPEQKSSDGALEKKSDEKKSDGDVEDLKDVRETVGQDPVEMKRNEDVTSDANVIEH 178
Query: 438 PR 433
R
Sbjct: 179 DR 180
>03_06_0423 + 33822904-33823545
Length = 213
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 228 AADGAVCVVAASRCAGSAARVRPGPGLRR 314
A D + A RCAG+ A V P P LRR
Sbjct: 55 AHDDSALFAADDRCAGAVAVVEPPPPLRR 83
>02_05_1092 -
34049640-34049934,34050013-34050147,34050229-34050305,
34050541-34050624,34050699-34050849,34050944-34051060,
34051162-34051219,34051412-34051502,34051601-34051648,
34051724-34051792,34051881-34051904,34052125-34052233,
34052338-34052375,34052524-34052672,34052765-34052780
Length = 486
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = -2
Query: 621 EVLEAPQVQRGERAGRRVLEGQALEDGDVEGSESVRQRVGSDAAPSKRHVEDARAA 454
+V+EAP+++ + AG V G+A D+E E R+ + DA K ++R A
Sbjct: 310 QVVEAPELKEIQEAGSSVAGGEA-HKFDIEDPEPPRKSMRIDANKRKLESFESRLA 364
>03_01_0270 -
2085461-2086205,2086260-2086339,2086598-2086690,
2086774-2086881,2087012-2087101,2087234-2087275,
2087516-2087587,2090848-2090985,2091074-2092624
Length = 972
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 636 EVKSQEVLEAPQVQRGERAGRRVLEGQALEDGDVEGSESVRQRVGSDAAPSKRHVEDARA 457
EV+ L+ + +G G+ D G E+ Q V +D S +DAR
Sbjct: 801 EVQDPVELDTDSIPKGRDHKNLDTRGEC--DAPTAGDENTDQGVEADQTDSTDAQDDARG 858
Query: 456 AVERRH 439
+ER H
Sbjct: 859 TIERGH 864
>07_01_0513 +
3828196-3828309,3828408-3828722,3828823-3828879,
3829668-3829826,3829918-3830028,3830173-3830259,
3830359-3830591,3830808-3830886,3831173-3831316,
3831529-3831568,3831667-3831729,3832193-3832224,
3832320-3832361,3832444-3832557
Length = 529
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Frame = -2
Query: 636 EVKSQEVLEAPQVQRGERAGRRVLEGQALEDGD--------VEGSESVRQRVGSDAAPSK 481
E +Q +AP V++ R + L+ + GD ++ E + ++V S A ++
Sbjct: 335 EDNTQSTSQAPSVRQSARTAGKALKYTEISSGDDSSDNDDEIDVPEDMDEKVKSPAVKNE 394
Query: 480 RHVEDARAAVERRHPRTAQRHAL 412
ED + A P +A++ L
Sbjct: 395 SQSEDIKPADSSAQPISAKKEPL 417
>04_04_0762 -
27844427-27844542,27844876-27844912,27845436-27845867,
27846036-27846740
Length = 429
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 549 EDGDVEGSESVRQRVGSDAAPSKRHVED 466
EDG+VEG ES G + P V+D
Sbjct: 276 EDGNVEGEESGEDNEGREKGPKMSKVDD 303
>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
Length = 420
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = -2
Query: 591 GERAGRRVLEGQALEDGDVEGSESVRQRVGSDAAPSKRHVEDARAAVER 445
GE +R +ALE+ +++ R+R +AA ++R +EDAR A R
Sbjct: 312 GEEEQQREEVRRALEEKTA--ADAARERAREEAAAAERALEDARRARHR 358
>06_02_0061 -
11043183-11043417,11043556-11043796,11043923-11044106,
11044228-11044437,11045135-11045423,11045787-11045923,
11046019-11046137,11046405-11046518,11046710-11046803
Length = 540
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/23 (43%), Positives = 19/23 (82%)
Frame = -2
Query: 558 QALEDGDVEGSESVRQRVGSDAA 490
+A+E G ++GS SV++++ +DAA
Sbjct: 491 EAVEAGAIDGSRSVKRKIEADAA 513
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,895,021
Number of Sequences: 37544
Number of extensions: 227884
Number of successful extensions: 1285
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -