Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D10
         (746 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   2.6  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   4.5  
EF222289-1|ABN79649.1|   68|Tribolium castaneum adipokinetic hor...    22   6.0  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 394 VKFAVLVMKNPPMYFNEHIKIYLM*LHFYRTHS 492
           V F      +P M F  H  ++    HF+ +HS
Sbjct: 149 VPFVTQCPIHPGMTFRYHFNVHNSGTHFWHSHS 181


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 5   RPMLHFVRCSLHL 43
           RP  HF RC  HL
Sbjct: 694 RPFSHFPRCGNHL 706


>EF222289-1|ABN79649.1|   68|Tribolium castaneum adipokinetic
           hormone 2 protein.
          Length = 68

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 142 KXFIDTVPLIYK*IKN 189
           K  +DT+ LIYK I+N
Sbjct: 40  KESVDTIMLIYKIIQN 55


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,525
Number of Sequences: 336
Number of extensions: 3329
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)