Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D10
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    29   0.93 
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    27   2.1  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    27   2.8  
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.8  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    26   5.0  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.6  
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch...    26   6.6  

>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 405 SISYEKPTNVLQRTYKDLSDVTPFLSNTFNLAAYVNHSKTLQNLI 539
           S++ E+   +     K  SD +  + N+FN+ A  N    LQN I
Sbjct: 53  SVAKERQKKISDPARKFFSDFSKLIDNSFNVFAKKNEGDLLQNAI 97


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 20/84 (23%), Positives = 43/84 (51%)
 Frame = +3

Query: 489 FNLAAYVNHSKTLQNLIDLNVNISKFEKKPYIIEKLLKLDFEKNMKSHIVFLSDYVNMEQ 668
           F LAA ++  K L  ++ L   ++   KK + IEK L ++   N+  ++VF+++   ++ 
Sbjct: 687 FTLAASLSDQKFLNLVVLLQGGLNGLSKKLHFIEK-LNIEL-LNLLINVVFVTESPGVKI 744

Query: 669 MGEFFTKNPMIFCEHLEDLKTXVN 740
                  + +  CE  ED+ + ++
Sbjct: 745 SALRLISSLINKCEKDEDISSFIS 768


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +3

Query: 429 NVLQRTYKDLSDVTPF----LSNTFNLAAYVNHSKTLQNLIDLNVNISKFEKKPYII 587
           + +   YK ++D+ P     L+ +FN+AA    S    +LIDL + IS +  + Y +
Sbjct: 636 DTIHSVYKKVTDLLPDSLNDLAGSFNIAADGISSPMAYSLIDLLIVISPYLNQDYAV 692


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 474 FLSNTFNLAAYVNHSKTLQNLIDLNVNISKFEKKPYIIEKLLKLDFEKNMKSHIVFLSDY 653
           F+   F++    +  K+  N+++LNVN+S  +K    I+  L    E  M+      S Y
Sbjct: 184 FIYPRFHVVVAESLEKSPANVVELNVNLSDSQK---TIQSCLLTCIESTMRELRRLNSAY 240

Query: 654 VNME 665
           ++ME
Sbjct: 241 LDME 244


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/76 (22%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = +3

Query: 477 LSNTFNLAAYVNHSKTLQNLIDLNVNISKFEKKPYIIE-KLLKL-DFEKNMKSHIVFLSD 650
           +++ FN+A +   +K   + +D+++ +  F+K   ++     K+ D +   KSH VFL +
Sbjct: 250 VNHEFNIALFKQTAKNFYDTLDISLLLGLFDKSISMLNCHSSKISDGDIPYKSHQVFLQE 309

Query: 651 YVNMEQMGEFFTKNPM 698
             N     + ++ N +
Sbjct: 310 LQNKYSEIKTYSSNKL 325


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = +3

Query: 519 KTLQN-LIDLNVNISKFEKKPYIIEKL----LKLDFEKNMKSHIVFLSD 650
           ++LQN +ID    +  FE+KP ++EK     LK+   K + SH+ F  D
Sbjct: 546 RSLQNSIIDTERLLEIFEEKPTVVEKPNAPDLKVTQGKVIFSHVSFAYD 594


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 322 LINNLQMAISQNKLNLKVYSTGTFSIFQSCF 230
           ++N+ Q+ + Q   N  VYS GT S F +C+
Sbjct: 1   MMNDSQVQLFQ-LYNYSVYSNGTISNFTNCY 30


>SPAC1805.02c |||electron transfer flavoprotein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 549 VNISKFEKKPYIIEKLLKLDFEKNMKSHIVFL 644
           +N+ + E +P  + KLLK   EK  KS++V L
Sbjct: 91  INVGEKELEPLSVAKLLKATVEKE-KSNLVLL 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,401
Number of Sequences: 5004
Number of extensions: 53521
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)