Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D10
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55580.1 68418.m06929 mitochondrial transcription termination...    29   4.3  
At1g72920.1 68414.m08434 disease resistance protein (TIR-NBS cla...    28   5.7  
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /...    28   7.6  
At1g72940.1 68414.m08436 disease resistance protein (TIR-NBS cla...    27   10.0 

>At5g55580.1 68418.m06929 mitochondrial transcription termination
           factor family protein / mTERF family protein weak
           similarity to mtDBP protein [Paracentrotus lividus]
           GI:4584695; contains Pfam profile PF02536: mTERF
          Length = 496

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 591 KLLKLDFEKNMKSHIVFLSDY-VNMEQMGEFFTKNPMIFCEHLED-LKTXVNYL 746
           ++L+   E N+K+HI FL    +   ++G+     P +F   +E+ L+  + YL
Sbjct: 245 QILQYTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVENSLRPTIRYL 298


>At1g72920.1 68414.m08434 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 275

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +3

Query: 402 CSISYEKPTNVLQ----RTYKDLSDVTPFLSNTFNLAAYVNHSKTLQNLIDLNVNIS 560
           CS+ +E   N++     +  K+L  VT  +SN  +L     H K L   +DLN N S
Sbjct: 151 CSLKWEDEANLVDEIADKISKNLMTVTT-ISNGRDLVGIDTHMKALNKKLDLNSNKS 206


>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
           (Alpha-tocopherol associated protein) (TAP) (bTAP)
           (Fragment) (SP:P58875)  {Bos taurus}
          Length = 683

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +3

Query: 555 ISKFEK-KPYIIEKLLK-LDFEKNMKSHIVFLSDYVNMEQMGE 677
           +SKF K +    EK ++ LDF    KS  VF+SD+ N   +G+
Sbjct: 447 LSKFLKWRIQFQEKCVRSLDFSPEAKSSFVFVSDFRNAPGLGQ 489


>At1g72940.1 68414.m08436 disease resistance protein (TIR-NBS
           class), putative domain signature TIR-NBS exists,
           suggestive of a disease resistance protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +3

Query: 354 RSMCGYLQVEPGESEICSISYEKPTNVLQRTYKDLSDVTPFLSNTFNLAAYVNHSKTLQN 533
           R++     +    S  C    +    +  +  K+L  VT  +SN  NL     H K L  
Sbjct: 139 RALTSLASISGDCSSKCEDEAKLVDEIADKISKNLMTVTT-ISNGKNLVGIDTHMKALNK 197

Query: 534 LIDLNVNIS 560
            +DLN N S
Sbjct: 198 KLDLNSNKS 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,485,853
Number of Sequences: 28952
Number of extensions: 249509
Number of successful extensions: 524
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)