Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D09
         (712 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    87   7e-19
DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.           23   7.2  
AJ439060-15|CAD27766.1|   56|Anopheles gambiae putative ribosoma...    23   7.2  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 86.6 bits (205), Expect = 7e-19
 Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 7/176 (3%)
 Frame = +1

Query: 193 VKGSYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMG 372
           V G     H   F    L+ E++  +    +  P+ +Q   IP  + G D++  A++G G
Sbjct: 164 VSGENPPDHVESFERSGLREEVMTNVRKSSYTKPTPIQRYAIPIILNGRDLMACAQTGSG 223

Query: 373 KTAVFVLATLQQLEPSESHV-------YVLVMCHTRELAFQISKEYERFSKYMSGVRVSV 531
           KTA F+L  +  L   E  +       Y++++  TRELA QI  E  +F+ + + ++V V
Sbjct: 224 KTAAFMLPMIHHLLDKEDSLELRTRNPYIVIVAPTRELAIQIHDEGRKFA-HGTKLKVCV 282

Query: 532 FFGGMPIQKDEEVLKTACPHIVVGTPGRILAXXXXXXXXXXXXXXFILDECDKMLE 699
            +GG  +Q   ++++  C H++V TPGR+L                +LDE D+ML+
Sbjct: 283 SYGGTAVQHQLQLMRGGC-HVLVATPGRLLDFIDRGYVTFENVNFVVLDEADRMLD 337


>DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 508 YISRNARTPYLFGKPTLWCGT 446
           + + +A   YLFG   +WC T
Sbjct: 53  FYTHSALLNYLFGMEGVWCST 73


>AJ439060-15|CAD27766.1|   56|Anopheles gambiae putative ribosomal
           protein protein.
          Length = 56

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 10/38 (26%), Positives = 15/38 (39%)
 Frame = -2

Query: 444 YKHVNVALGGFQLLQCCQNKHGCLTHTGLGLAKYVHTE 331
           Y H      G +  + C N HG +   GL + +    E
Sbjct: 8   YSHPRKYGQGSRFWRACSNNHGMIRKYGLNICRQCFRE 45


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 682,071
Number of Sequences: 2352
Number of extensions: 14453
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72758970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)